Context-dependent siderophore exploitability shapes microbial community structure

Siderophores are classically viewed as shared iron-scavenging public goods, yet their ecological roles in multispecies communities remain incompletely understood. Here, we establish a synthetic microbial community to dissect how different siderophores, their uptake compatibility and spatial structure shape iron competition. Using Corynebacterium glutamicum as a model, we show that this siderophore non-producer accesses diverse xenosiderophores, including enterobactin secreted by Escherichia coli. However, exploitation was constrained and co-cultures converged to stable compositions. Dose-response experiments combined with mathematical modelling indicated that the producer retains more effective access to enterobactin than the exploiter. The presence of Pseudomonas putida altered this interaction, as it exploited enterobactin while producing pyoverdine, a siderophore inaccessible to the other community members that restricted their iron access. Across different cultivation scales, community dynamics was strongly influenced by spatial organization and initial composition. These findings identify siderophores as context-dependent iron-allocation agents that can promote microbial coexistence or exclusion.

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Publication Details

Journal
The ISME Journal
Published
2026-09-16
DOI
https://doi.org/10.1093/ismejo/wrag247
Primary Topic
Evolutionary Game Theory and Cooperation
Type
article
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article

Context-dependent siderophore exploitability shapes microbial community structure

Thomas Drepper, Dietrich Kohlheyer, A. Krüger, Matthias Pesch et al.
The ISME Journal
Evolutionary Game Theory and Cooperation
article

Context-dependent siderophore exploitability shapes microbial community structure

Thomas Drepper, Dietrich Kohlheyer, A. Krüger, Matthias Pesch, Michael Bott, Sanga Paik, Anna Matuszyńska, Michelle Bund, Julia Frunzke, Stephan Krueger, Sander H. J. Smits, Johanna Wiechert, Philipp Westhoff, Benita Lückel, Athanasios P. Papadopoulos, Ulrike Weber, Akos Kovacs, Tanvir Hassan, Romain Allelan
article en

Abstract

Siderophores are classically viewed as shared iron-scavenging public goods, yet their ecological roles in multispecies communities remain incompletely understood. Here, we establish a synthetic microbial community to dissect how different siderophores, their uptake compatibility and spatial structure shape iron competition. Using Corynebacterium glutamicum as a model, we show that this siderophore non-producer accesses diverse xenosiderophores, including enterobactin secreted by Escherichia coli. However, exploitation was constrained and co-cultures converged to stable compositions. Dose-response experiments combined with mathematical modelling indicated that the producer retains more effective access to enterobactin than the exploiter. The presence of Pseudomonas putida altered this interaction, as it exploited enterobactin while producing pyoverdine, a siderophore inaccessible to the other community members that restricted their iron access. Across different cultivation scales, community dynamics was strongly influenced by spatial organization and initial composition. These findings identify siderophores as context-dependent iron-allocation agents that can promote microbial coexistence or exclusion.

The ISME Journal
Leiden University (NL), Forschungszentrum Jülich (DE), Cluster of Excellence on Plant Sciences (DE), Heinrich Heine University Düsseldorf (DE), RWTH Aachen University (DE)
Reduced inequalities
Openalex Percentile: Top 30%
Evolutionary Game Theory and Cooperation
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