Identification of lactate metabolism-related genes as kidney fibrosis biomarkers through integrated transcriptomic and experimental analyses

Kidney fibrosis, the final pathological outcome of chronic kidney disease, lacks reliable biomarkers, and the role of lactylation in its pathogenesis remains poorly defined. We integrated multi-omics, machine learning, and experimental validation to identify lactylation-associated biomarkers using two public transcriptomic datasets. After batch correction and differential expression analysis, 13 overlapping lactylation-modified genes were obtained, and eight hub genes were identified via 113 model combinations. Downregulated hub genes regulate core renal metabolic pathways including TCA cycle and oxidative phosphorylation, while upregulated genes mediate immune-inflammatory activation and cytokine signaling. Immune infiltration analysis showed significant immune cell enrichment in fibrotic tissues, with hub genes correlated with T cell subsets. Six hub genes were validated in UUO mouse models and human fibrotic kidney tissues. A five-gene diagnostic panel exhibited robust diagnostic performance with AUCs of 0.89–0.90. This study establishes a lactylation-related diagnostic signature, reveals metabolic-immune crosstalk, and supports early clinical diagnosis of kidney fibrosis.

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Publication Details

Journal
iScience
Published
2026-07-16
DOI
https://doi.org/10.1016/j.isci.2026.116805
Primary Topic
Chronic Kidney Disease and Diabetes
Type
article
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article

Identification of lactate metabolism-related genes as kidney fibrosis biomarkers through integrated transcriptomic and experimental analyses

向秀红, Shiyan Nian, Chuanmei Peng, Ye Kuang et al.
iScience
Chronic Kidney Disease and Diabetes
article

Identification of lactate metabolism-related genes as kidney fibrosis biomarkers through integrated transcriptomic and experimental analyses

向秀红, Shiyan Nian, Chuanmei Peng, Ye Kuang, Pei He, Lei Feng, Ji Yong
article en

Abstract

Kidney fibrosis, the final pathological outcome of chronic kidney disease, lacks reliable biomarkers, and the role of lactylation in its pathogenesis remains poorly defined. We integrated multi-omics, machine learning, and experimental validation to identify lactylation-associated biomarkers using two public transcriptomic datasets. After batch correction and differential expression analysis, 13 overlapping lactylation-modified genes were obtained, and eight hub genes were identified via 113 model combinations. Downregulated hub genes regulate core renal metabolic pathways including TCA cycle and oxidative phosphorylation, while upregulated genes mediate immune-inflammatory activation and cytokine signaling. Immune infiltration analysis showed significant immune cell enrichment in fibrotic tissues, with hub genes correlated with T cell subsets. Six hub genes were validated in UUO mouse models and human fibrotic kidney tissues. A five-gene diagnostic panel exhibited robust diagnostic performance with AUCs of 0.89–0.90. This study establishes a lactylation-related diagnostic signature, reveals metabolic-immune crosstalk, and supports early clinical diagnosis of kidney fibrosis.

iScienceVol. 29(8)
Kunming Medical University (CN), Yan'an Hospital Affiliated To Kunming Medical University (CN), Sixth Affiliated Hospital of Kunming Medical University (CN)
Good health and well-being
Openalex Percentile: Top 9%
Chronic Kidney Disease and Diabetes
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