Spatial transcriptomic analyses highlight distinct erythroid niches in mice and humans

Erythroid cells require specialized microenvironments called erythroblastic islands (EBIs), niches comprising a central macrophage surrounded by developing erythroid precursors, to complete their maturation. Understanding EBI composition and function has been limited by two-dimensional in vitro models and the unclear composition of EBIs in human hematopoietic tissues. Using spatial transcriptomic mapping in mouse and human hematopoietic tissues during development and under stress conditions, we show that EBI architecture is unexpectedly species-specific. In mice, C1q-expressing macrophages serve as a hallmark of EBI central macrophages and mediate clearance of ejected erythroid nuclei. In humans, however, EBIs are characterized by macrophage-independent erythroid clusters in fetal liver and bone marrow, whose integrity depends critically on the adhesion molecule ICAM4. These human erythroid clusters are disrupted in myeloid diseases but can be restored with therapy. These findings redefine conventional models of erythroid niche biology and establish a framework for understanding niche dynamics across species.

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Publication Details

Journal
Nature Genetics
Published
2026-07-02
DOI
https://doi.org/10.1038/s41588-026-02671-2
Primary Topic
Erythrocyte Function and Pathophysiology
Type
article
Field-Weighted Citation Impact
0.00

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article

Spatial transcriptomic analyses highlight distinct erythroid niches in mice and humans

Honghao Bi, Madina Jh. SUKHANOVA, Peng Ji, Ermin Li et al.
Nature Genetics
Erythrocyte Function and Pathophysiology
article

Spatial transcriptomic analyses highlight distinct erythroid niches in mice and humans

Honghao Bi, Madina Jh. SUKHANOVA, Peng Ji, Ermin Li, Laya Soleimanisardoo, Kehan Ren, Jie Yang, Pan Wang, Wenjie Cai, Amy Ji, Ching Man Wai, Matthew J. Schipma, Jeffery Goldstein, Xu Han, Yijie Liu, Inci Aydemir
article en

Abstract

Erythroid cells require specialized microenvironments called erythroblastic islands (EBIs), niches comprising a central macrophage surrounded by developing erythroid precursors, to complete their maturation. Understanding EBI composition and function has been limited by two-dimensional in vitro models and the unclear composition of EBIs in human hematopoietic tissues. Using spatial transcriptomic mapping in mouse and human hematopoietic tissues during development and under stress conditions, we show that EBI architecture is unexpectedly species-specific. In mice, C1q-expressing macrophages serve as a hallmark of EBI central macrophages and mediate clearance of ejected erythroid nuclei. In humans, however, EBIs are characterized by macrophage-independent erythroid clusters in fetal liver and bone marrow, whose integrity depends critically on the adhesion molecule ICAM4. These human erythroid clusters are disrupted in myeloid diseases but can be restored with therapy. These findings redefine conventional models of erythroid niche biology and establish a framework for understanding niche dynamics across species.

Nature Genetics
Northwestern University (US), Robert H. Lurie Comprehensive Cancer Center of Northwestern University
National Heart, Lung, and Blood Institute, National Cancer Institute, National Institute of Diabetes and Digestive and Kidney Diseases
Openalex Percentile: Top 8%
Erythrocyte Function and Pathophysiology
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