Development of a Data Extraction Tool for Protein Crystallization Conditions

This presentation accompanies the final thesis defense for the Master in Data Management and Curation (MDMC) 2026 at Area Science Park, Trieste. It describes the design and implementation of an automated pipeline that converts raw protein, DNA, or RNA sequences into a consolidated, machine-readable dataset of experimentally validated crystallization conditions extracted from historical data. The pipeline is designed to facilitate data reuse, reproducibility, and compliance with the FAIR Data Principles.

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Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-07-01
DOI
https://doi.org/10.5281/zenodo.21085635
Primary Topic
Research Data Management Practices
Type
article
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article

Development of a Data Extraction Tool for Protein Crystallization Conditions

Ruth Njantang Nana, Andrea Dalle Vedove, Valerio Piomponi
Zenodo (CERN European Organization for Nuclear Research)
Research Data Management Practices
article

Development of a Data Extraction Tool for Protein Crystallization Conditions

Ruth Njantang Nana, Andrea Dalle Vedove, Valerio Piomponi
article en

Abstract

This presentation accompanies the final thesis defense for the Master in Data Management and Curation (MDMC) 2026 at Area Science Park, Trieste. It describes the design and implementation of an automated pipeline that converts raw protein, DNA, or RNA sequences into a consolidated, machine-readable dataset of experimentally validated crystallization conditions extracted from historical data. The pipeline is designed to facilitate data reuse, reproducibility, and compliance with the FAIR Data Principles.

Zenodo (CERN European Organization for Nuclear Research)
Scuola Internazionale Superiore di Studi Avanzati (IT), Elettra-Sincrotrone Trieste S.C.p.A. (IT), Vitenparken (NO)
Openalex Percentile: Top 3%
Research Data Management Practices
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