Web Application for DPCfam and DPCstruct Data Exploration

Slides presenting the MDMC master's thesis project DPCexplorer, a Django web application for the interactive exploration of the DPCfam and DPCstruct protein domain classifications. The content introduces the annotation gap that motivates the work, explains how the two unsupervised datasets were preprocessed on the ORFEO HPC cluster and served from a PostgreSQL database, and walks through the main features of the platform: the four query types, the per-protein domain-architecture diagram, the downloadable biological files (FASTA, MSA, HMM, PDB), and the embedded PDBe-Molstar (Mol*) 3D viewer. Aligned with software release v1.0.3.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-06-30
DOI
https://doi.org/10.5281/zenodo.20850391
Primary Topic
Cell Image Analysis Techniques
Type
article
Field-Weighted Citation Impact
0.00

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article

Web Application for DPCfam and DPCstruct Data Exploration

Emmanuel Nyandu Kagarabi
Zenodo (CERN European Organization for Nuclear Research)
Cell Image Analysis Techniques
article

Web Application for DPCfam and DPCstruct Data Exploration

Emmanuel Nyandu Kagarabi
article en

Abstract

Slides presenting the MDMC master's thesis project DPCexplorer, a Django web application for the interactive exploration of the DPCfam and DPCstruct protein domain classifications. The content introduces the annotation gap that motivates the work, explains how the two unsupervised datasets were preprocessed on the ORFEO HPC cluster and served from a PostgreSQL database, and walks through the main features of the platform: the four query types, the per-protein domain-architecture diagram, the downloadable biological files (FASTA, MSA, HMM, PDB), and the embedded PDBe-Molstar (Mol*) 3D viewer. Aligned with software release v1.0.3.

Zenodo (CERN European Organization for Nuclear Research)
Heze University (CN), Vitenparken (NO)
European Commission
Openalex Percentile: Top 7%
Cell Image Analysis Techniques
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