Deep residual learning for molecular force fields

Accurate descriptions of interactions between atoms are essential for molecular simulations used to study biology and support drug discovery. Existing force fields often face a trade-off between physical reliability, computational efficiency, and accuracy across unfamiliar molecules. Here we show that Residual Learning Force Field, a hybrid machine learning force field, can reduce this trade-off by combining simple physics-based descriptions of bonded interactions with learned corrections for remaining energetic effects. The two components are trained together through a three-step strategy so that each contributes complementary information. In tests covering drug-like molecules, molecular dimers, torsional energy profiles, energy-minimum structures, and biomolecular simulations, Residual Learning Force Field gives accurate and stable predictions across diverse systems. These results suggest that combining physical constraints with data-driven corrections can provide a practical route toward more reliable and efficient molecular simulation for biological research and drug discovery.

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Publication Details

Journal
Nature Communications
Published
2026-06-30
DOI
https://doi.org/10.1038/s41467-026-74983-0
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00
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article

Deep residual learning for molecular force fields

Zunyun Fu, R X Zhang, Xutong Li, Mingan Chen et al.
Nature Communications
Machine Learning in Materials Science
article

Deep residual learning for molecular force fields

Zunyun Fu, R X Zhang, Xutong Li, Mingan Chen, Mingyue Zheng, Zhehuan Fan, Xinyu Jiang, Duanhua Cao, Xiaomin Luo, Chuanlong Zeng, Dan Teng, Jie Yu, Jiacheng Xiong
article en

Abstract

Accurate descriptions of interactions between atoms are essential for molecular simulations used to study biology and support drug discovery. Existing force fields often face a trade-off between physical reliability, computational efficiency, and accuracy across unfamiliar molecules. Here we show that Residual Learning Force Field, a hybrid machine learning force field, can reduce this trade-off by combining simple physics-based descriptions of bonded interactions with learned corrections for remaining energetic effects. The two components are trained together through a three-step strategy so that each contributes complementary information. In tests covering drug-like molecules, molecular dimers, torsional energy profiles, energy-minimum structures, and biomolecular simulations, Residual Learning Force Field gives accurate and stable predictions across diverse systems. These results suggest that combining physical constraints with data-driven corrections can provide a practical route toward more reliable and efficient molecular simulation for biological research and drug discovery.

Nature Communications
Uppsala University (SE), Chinese Academy of Sciences (CN), Science for Life Laboratory (SE), ShanghaiTech University (CN), Shanghai Institute of Materia Medica (CN), Zhejiang Lab (CN), University of Chinese Academy of Sciences (CN), Zhejiang University (CN)
Openalex Percentile: Top 16%
Machine Learning in Materials Science
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