Benign Share Benefit to Malignant: Balanced Mixing on Feature Space for Imbalanced Breast Cancer Classification

A deep learning model with an imbalanced mammography dataset can bias models toward common benign BI-RADS categories and reduce recognition of less frequent malignant or high-risk categories. To address this issue, we propose B2M (Benign Share Benefit to Malignant), a model-agnostic framework for imbalance-aware multi-class BI-RADS classification in C-View mammography. B2M uses a two-phase training strategy that combines dual sampling with feature-space mixing. In Phase I, the model is trained with dual sampling, integrating instance-based and class-balanced sampling to increase minority-class representation while preserving majority-class diversity. In Phase II, the model is fine-tuned with feature-space mixing using samples from the two sampling streams. A soft-target regularization objective supervises the mixed features using labels from both streams, encouraging smoother decision boundaries across BI-RADS categories. We evaluated B2M on an imbalanced mammography cohort from the C-View EMBED dataset using stratified 5-fold cross-validation across multiple CNN backbones. C-View is a synthesized 2D mammographic image generated from 3D digital breast tomosynthesis data, capturing DBT-derived structural information while requiring less memory and computation than processing the full 3D image volume. Among these experiments, ResNeXt-50 with B2M achieved the highest balanced accuracy and Macro-F1 scores compared with the evaluated oversampling and mixing-based methods. This improvement requires an offline training-time overhead of approximately 2.81×, but it does not increase inference cost. Overall, the results suggest that B2M may be useful for imbalanced multi-class BI-RADS classification in C-View mammography. However, the findings are based on the EMBED cohort, and further validation, including external and prospective evaluation, is needed before clinical use.

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Publication Details

Journal
Bioengineering
Published
2026-06-30
DOI
https://doi.org/10.3390/bioengineering13070765
Primary Topic
AI in cancer detection
Type
article
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article

Benign Share Benefit to Malignant: Balanced Mixing on Feature Space for Imbalanced Breast Cancer Classification

Ika Candradewi, Shih‐Lun Chen, Bach-Tung Pham, Farchan Hakim Raswa et al.
Bioengineering
AI in cancer detection
article

Benign Share Benefit to Malignant: Balanced Mixing on Feature Space for Imbalanced Breast Cancer Classification

Ika Candradewi, Shih‐Lun Chen, Bach-Tung Pham, Farchan Hakim Raswa, Yung‐Hui Li, Kuo-Chen Li, J WANG, Ming-Hsiang Su, Chung-I Huang, Afiahayati, Muhammad Fadlurrohman
article en

Abstract

A deep learning model with an imbalanced mammography dataset can bias models toward common benign BI-RADS categories and reduce recognition of less frequent malignant or high-risk categories. To address this issue, we propose B2M (Benign Share Benefit to Malignant), a model-agnostic framework for imbalance-aware multi-class BI-RADS classification in C-View mammography. B2M uses a two-phase training strategy that combines dual sampling with feature-space mixing. In Phase I, the model is trained with dual sampling, integrating instance-based and class-balanced sampling to increase minority-class representation while preserving majority-class diversity. In Phase II, the model is fine-tuned with feature-space mixing using samples from the two sampling streams. A soft-target regularization objective supervises the mixed features using labels from both streams, encouraging smoother decision boundaries across BI-RADS categories. We evaluated B2M on an imbalanced mammography cohort from the C-View EMBED dataset using stratified 5-fold cross-validation across multiple CNN backbones. C-View is a synthesized 2D mammographic image generated from 3D digital breast tomosynthesis data, capturing DBT-derived structural information while requiring less memory and computation than processing the full 3D image volume. Among these experiments, ResNeXt-50 with B2M achieved the highest balanced accuracy and Macro-F1 scores compared with the evaluated oversampling and mixing-based methods. This improvement requires an offline training-time overhead of approximately 2.81×, but it does not increase inference cost. Overall, the results suggest that B2M may be useful for imbalanced multi-class BI-RADS classification in C-View mammography. However, the findings are based on the EMBED cohort, and further validation, including external and prospective evaluation, is needed before clinical use.

BioengineeringVol. 13(7)
Honda (Japan) (JP), Chung Yuan Christian University (TW), National Chung Hsing University (TW), Universitas Gadjah Mada (ID), Soochow University (TW), National Central University (TW)
Peace, Justice and strong institutions
Openalex Percentile: Top 8%
AI in cancer detection
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