Mermaid flowcharts for perturbation design: diagrams-as-code, curated databases, and the E. coli lac operon as a worked example

Methods paper on Mermaid flowcharts for perturbation design, E. coli lac operon worked example. Version 1.5: two self-contained files only (PDF + Markdown with embedded figures). Voigt et al. (2016) synthetic biology framing included.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-06-28
DOI
https://doi.org/10.5281/zenodo.21006464
Primary Topic
Gene Regulatory Network Analysis
Type
preprint
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preprint

Mermaid flowcharts for perturbation design: diagrams-as-code, curated databases, and the E. coli lac operon as a worked example

Gary Welz
Zenodo (CERN European Organization for Nuclear Research)
Gene Regulatory Network Analysis
preprint

Mermaid flowcharts for perturbation design: diagrams-as-code, curated databases, and the E. coli lac operon as a worked example

Gary Welz
preprint en

Abstract

Methods paper on Mermaid flowcharts for perturbation design, E. coli lac operon worked example. Version 1.5: two self-contained files only (PDF + Markdown with embedded figures). Voigt et al. (2016) synthetic biology framing included.

Zenodo (CERN European Organization for Nuclear Research)
The Graduate Center, CUNY (US)
Gene Regulatory Network Analysis
DOIOpen Access PDFOpenAlex
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