Mermaid flowcharts for perturbation design: diagrams-as-code, curated databases, and the E. coli lac operon as a worked example

Methods paper on Mermaid flowcharts for perturbation design, using the E. coli lac operon as a worked example. Version 1.4 (June 28, 2026): Figures embedded inside the PDF and Markdown (self-contained); Voigt et al. (2016) synthetic biology framing included.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-06-28
DOI
https://doi.org/10.5281/zenodo.21006439
Primary Topic
Gene Regulatory Network Analysis
Type
preprint
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preprint

Mermaid flowcharts for perturbation design: diagrams-as-code, curated databases, and the E. coli lac operon as a worked example

Gary Welz
Zenodo (CERN European Organization for Nuclear Research)
Gene Regulatory Network Analysis
preprint

Mermaid flowcharts for perturbation design: diagrams-as-code, curated databases, and the E. coli lac operon as a worked example

Gary Welz
preprint en

Abstract

Methods paper on Mermaid flowcharts for perturbation design, using the E. coli lac operon as a worked example. Version 1.4 (June 28, 2026): Figures embedded inside the PDF and Markdown (self-contained); Voigt et al. (2016) synthetic biology framing included.

Zenodo (CERN European Organization for Nuclear Research)
The Graduate Center, CUNY (US)
Gene Regulatory Network Analysis
DOIOpen Access PDFOpenAlex
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