Keeping Green and Functional: Photosynthetic Integrity and Leaf Area Underpin Waterlogging Tolerance in Bread Wheat

Waterlogging at the tillering stage, a key early vegetative growth stage, is increasingly limiting wheat productivity worldwide, but the physiological mechanisms underlying genotypic tolerance are not fully understood. To address this, 23 bread wheat (Triticum aestivum L.) genotypes from five germplasm groups were exposed to 14 days of waterlogging at the tillering stage. Morphological traits including leaf (green area, biomass, and senescent biomass proportion) and the elongation rate of the main culm (cm day−1), plant water status (relative water content, RWC), photosynthetic pigment content (SPAD values; total chlorophyll, TChl; total carotenoids, TCar), and photosynthetic performance (maximal photochemical efficiency of photosystem II, Fv/Fm; actual photochemical efficiency of photosystem II, Fv′/Fm′; net photosyntheis, Pn; stomatal conductance to water vapor, gs), were assessed. Waterlogging induced strong but highly variable responses among genotypes. Sensitive genotypes showed marked reductions in green biomass (up to ~40–60%), TChl content (up to ~80%), TCar (~70%), and photosynthetic performance, including declines in Fv/Fm, Fv′/Fm′, and Pn. In contrast, tolerant genotypes maintained higher photochemical efficiency, Pn, and pigment content, despite stress exposure, underscoring greater functional resilience. Importantly, morphological stability did not consistently translate into functional performance. Several genotypes maintained green leaf area despite pronounced declines in photosynthetic capacity and pigment content, revealing a decoupling between morphological and physiological responses. Multivariate analysis identified an integrated photosynthetic trait axis strongly associated with yield performance under stress, highlighting that tolerance is primarily driven by the capacity to maintain photosynthetic function rather than green biomass alone. Together, these findings emphasize the importance of preserving both physiological functionality and green leaf area to maintain waterlogging tolerance. Integrated physiological markers (e.g., TChl and TCar content, photochemical quenching, leaf gas exchange traits) enable effective early screening and support function-based selection in wheat breeding programs.