Explainable machine learning reveals soil, topographic, and climatic factors linked to European beech defoliation

European beech forests are increasingly threatened by environmental stressors, leading to declines in vitality as well as tree mortality. Crown defoliation is widely used as an indicator of forest condition because it integrates the combined influences of site characteristics, climatic variability, and biotic pressures. Although machine learning models have been increasingly applied to predict defoliation patterns, model interpretability and the role of validation strategies in assessing predictive performance remain insufficiently explored. In this study, we compared traditional statistical models (generalized linear models, GLM; generalized additive models, GAM) with machine learning approaches, including Random Forest, XGBoost, and the Feature Tokenized Transformer (FT-Transformer), as well as ensemble models. Crown defoliation across the German federal states of Schleswig-Holstein, Lower Saxony, and Hesse was predicted using geo-ecological and climatic predictors. Model performance was evaluated under three validation schemes representing different generalization scenarios: random split, temporal hold-out (leave-one-year-out), and spatial hold-out (leave-one-location-out). Predictive accuracy was highest under random split validation (R² up to approximately 0.80) and decreased under temporal validation, while spatial validation produced substantially lower performance, indicating limited spatial transferability. Machine learning models consistently outperformed GLM and GAM across all validation schemes. SHapley Additive exPlanations (SHAP) indicated that crown defoliation patterns were primarily associated with site-related soil properties, particularly bulk density, while climatic predictors such as previous-year solar radiation contributed to interannual variability. These findings highlight the importance of validation design when evaluating predictive models and demonstrate both the potential and limitations of data-driven approaches for forest health monitoring.

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Publication Details

Journal
Agricultural and Forest Meteorology
Published
2026-06-28
DOI
https://doi.org/10.1016/j.agrformet.2026.111328
Primary Topic
Tree-ring climate responses
Type
article
Field-Weighted Citation Impact
0.00

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article

Explainable machine learning reveals soil, topographic, and climatic factors linked to European beech defoliation

Birgit Kleinschmit, Q. Xu, Stenka Vulova, Annette Rudolph
Agricultural and Forest Meteorology
Tree-ring climate responses
article

Explainable machine learning reveals soil, topographic, and climatic factors linked to European beech defoliation

Birgit Kleinschmit, Q. Xu, Stenka Vulova, Annette Rudolph
article en

Abstract

European beech forests are increasingly threatened by environmental stressors, leading to declines in vitality as well as tree mortality. Crown defoliation is widely used as an indicator of forest condition because it integrates the combined influences of site characteristics, climatic variability, and biotic pressures. Although machine learning models have been increasingly applied to predict defoliation patterns, model interpretability and the role of validation strategies in assessing predictive performance remain insufficiently explored. In this study, we compared traditional statistical models (generalized linear models, GLM; generalized additive models, GAM) with machine learning approaches, including Random Forest, XGBoost, and the Feature Tokenized Transformer (FT-Transformer), as well as ensemble models. Crown defoliation across the German federal states of Schleswig-Holstein, Lower Saxony, and Hesse was predicted using geo-ecological and climatic predictors. Model performance was evaluated under three validation schemes representing different generalization scenarios: random split, temporal hold-out (leave-one-year-out), and spatial hold-out (leave-one-location-out). Predictive accuracy was highest under random split validation (R² up to approximately 0.80) and decreased under temporal validation, while spatial validation produced substantially lower performance, indicating limited spatial transferability. Machine learning models consistently outperformed GLM and GAM across all validation schemes. SHapley Additive exPlanations (SHAP) indicated that crown defoliation patterns were primarily associated with site-related soil properties, particularly bulk density, while climatic predictors such as previous-year solar radiation contributed to interannual variability. These findings highlight the importance of validation design when evaluating predictive models and demonstrate both the potential and limitations of data-driven approaches for forest health monitoring.

Agricultural and Forest MeteorologyVol. 388
Engineering Acoustics (United States) (US), Johann Heinrich von Thünen-Institut (DE), Leibniz Centre for Agricultural Landscape Research (DE), GeoInformation (United Kingdom) (GB), Technische Universität Berlin (DE)
Bundesministerium für Verkehr und Digitale Infrastruktur
Climate action
Openalex Percentile: Top 8%
Tree-ring climate responses
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