Chromosome-level genome assembly of the jumping spider Spartaeus platnicki

Jumping spiders, a diverse and charismatic group of invertebrates, are renowned for their highly specialized visual systems, complex courtship behaviours, and broad ecological adaptability. However, the persistent lack of high-quality genomic resources has hindered investigations into the genetic basis and phenotypic evolution of these key traits. To address this gap, we performed a de novo assembly of a chromosome-level genome for Spartaeus platnicki, a species representing the basal lineages of jumping spiders. This assembly, achieved by integrating PacBio HiFi long reads, Illumina short reads, RNA-seq, and Hi-C data, comprises 15 pseudo-chromosomes including the X1 and X2 sex chromosomes, spanning a total length of 3.71 Gb with a scaffold N50 of 262 Mb and a BUSCO completeness of 98.60%. Repetitive elements account for approximately 65.57% of the genome. We annotated 15,660 protein-coding genes, achieving a BUSCO completeness of 97.60%. This high-quality genome establishes a foundational resource for investigating the genetic architecture underlying key traits and their phenotypic evolution in jumping spiders.

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Publication Details

Journal
Scientific Data
Published
2026-06-24
DOI
https://doi.org/10.1038/s41597-026-07685-3
Primary Topic
Spider Taxonomy and Behavior Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Chromosome-level genome assembly of the jumping spider Spartaeus platnicki

J Zhang, Zhiyong Yang, Feng Zhang, Aidie Chen
Scientific Data
Spider Taxonomy and Behavior Studies
article

Chromosome-level genome assembly of the jumping spider Spartaeus platnicki

J Zhang, Zhiyong Yang, Feng Zhang, Aidie Chen
article en

Abstract

Jumping spiders, a diverse and charismatic group of invertebrates, are renowned for their highly specialized visual systems, complex courtship behaviours, and broad ecological adaptability. However, the persistent lack of high-quality genomic resources has hindered investigations into the genetic basis and phenotypic evolution of these key traits. To address this gap, we performed a de novo assembly of a chromosome-level genome for Spartaeus platnicki, a species representing the basal lineages of jumping spiders. This assembly, achieved by integrating PacBio HiFi long reads, Illumina short reads, RNA-seq, and Hi-C data, comprises 15 pseudo-chromosomes including the X1 and X2 sex chromosomes, spanning a total length of 3.71 Gb with a scaffold N50 of 262 Mb and a BUSCO completeness of 98.60%. Repetitive elements account for approximately 65.57% of the genome. We annotated 15,660 protein-coding genes, achieving a BUSCO completeness of 97.60%. This high-quality genome establishes a foundational resource for investigating the genetic architecture underlying key traits and their phenotypic evolution in jumping spiders.

Scientific Data
Hebei University of Technology (CN), Hebei University (CN)
National Natural Science Foundation of China
Life in Land
Openalex Percentile: Top 7%
Spider Taxonomy and Behavior Studies
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