Variant Interpretation Pipeline Based on Large Language Models: Application to the PS3 Criterion for <i>MYH7/RYR1</i>

Genetic variant discovery has expanded dramatically with the advent of next-generation sequencing (NGS).Variant classification is both challenging and critical for clinical decision-making.The American College of Medical Genetics and Genomics and the Association for Molecular Pathology (ACMG/AMP) established guidelines in 2015 to standardize variant classification [1].However, because the original guidelines are broad, disease-and gene-specific adaptations have been developed.These guidelines reflect the complexity of variant interpretation, as each criterion may vary across genes, and even a single criterion for a specific gene may be assigned different levels of strength depending on the available evidence [2].To address these challenges and support variant interpretation, various artificial intelligence (AI)-

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Publication Details

Journal
Laboratory Medicine Online
Published
2026-06-25
DOI
https://doi.org/10.47429/lmo.2026.16.3.237
Primary Topic
Natural Language Processing Techniques
Type
article
Field-Weighted Citation Impact
0.00

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article

Variant Interpretation Pipeline Based on Large Language Models: Application to the PS3 Criterion for MYH7/RYR1

S.J. Kim, Sangzin Ahn, Young-Eun Kim, Gaeun Kim
Laboratory Medicine Online
Natural Language Processing Techniques
article

Variant Interpretation Pipeline Based on Large Language Models: Application to the PS3 Criterion for MYH7/RYR1

S.J. Kim, Sangzin Ahn, Young-Eun Kim, Gaeun Kim
article en

Abstract

Genetic variant discovery has expanded dramatically with the advent of next-generation sequencing (NGS).Variant classification is both challenging and critical for clinical decision-making.The American College of Medical Genetics and Genomics and the Association for Molecular Pathology (ACMG/AMP) established guidelines in 2015 to standardize variant classification [1].However, because the original guidelines are broad, disease-and gene-specific adaptations have been developed.These guidelines reflect the complexity of variant interpretation, as each criterion may vary across genes, and even a single criterion for a specific gene may be assigned different levels of strength depending on the available evidence [2].To address these challenges and support variant interpretation, various artificial intelligence (AI)-

Laboratory Medicine OnlineVol. 16(3)
Inje University (KR), Hanyang University (KR)
National Research Foundation, National Research Foundation of Korea
Openalex Percentile: Top 6%
Natural Language Processing Techniques
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