Grid-free quantum crystallographic refinement using unbiased analytic atomic form factors from density fitting

Abstract Accurate crystal structure determination requires reliable models of how atoms scatter X-rays and electrons. While quantum crystallographic methods such as Hirshfeld atom refinement (HAR) markedly improve upon the widely used Independent Atom Model (IAM) by incorporating ab initio electron densities, their reliance on numerical real-space grids imposes a significant computational bottleneck. Here, we present a density-fitting-based refinement scheme that addresses this limitation by expanding the molecular electron density via the Resolution-of-the-Identity (RI) approach into atom-centred Gaussian contributions. This enables fully analytic evaluation of aspherical X-ray and electron scattering factors, eliminating the need for real-space grids or reference atoms entirely. Benchmark refinements on a diverse set of small-molecule crystals within Olex2/NoSpherA2 demonstrate that the RI-based model reproduces R values, residual electron density, X–H bond lengths, and anisotropic displacement parameters on par with HAR, while offering substantially improved computational efficiency. This is most prominent particularly at high diffraction resolution and for larger asymmetric units.

Authors

Institutions

Publication Details

Journal
Zeitschrift für Kristallographie - Crystalline Materials
Published
2026-06-18
DOI
https://doi.org/10.1515/zkri-2026-0013
Primary Topic
Enzyme Structure and Function
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Grid-free quantum crystallographic refinement using unbiased analytic atomic form factors from density fitting

Daniel Brüx, Florian Kleemiss, Teodora M. Piel, Lukas M. Seifert
Zeitschrift für Kristallographie - Crystalline Materials
Enzyme Structure and Function
article

Grid-free quantum crystallographic refinement using unbiased analytic atomic form factors from density fitting

Daniel Brüx, Florian Kleemiss, Teodora M. Piel, Lukas M. Seifert
article en

Abstract

Abstract Accurate crystal structure determination requires reliable models of how atoms scatter X-rays and electrons. While quantum crystallographic methods such as Hirshfeld atom refinement (HAR) markedly improve upon the widely used Independent Atom Model (IAM) by incorporating ab initio electron densities, their reliance on numerical real-space grids imposes a significant computational bottleneck. Here, we present a density-fitting-based refinement scheme that addresses this limitation by expanding the molecular electron density via the Resolution-of-the-Identity (RI) approach into atom-centred Gaussian contributions. This enables fully analytic evaluation of aspherical X-ray and electron scattering factors, eliminating the need for real-space grids or reference atoms entirely. Benchmark refinements on a diverse set of small-molecule crystals within Olex2/NoSpherA2 demonstrate that the RI-based model reproduces R values, residual electron density, X–H bond lengths, and anisotropic displacement parameters on par with HAR, while offering substantially improved computational efficiency. This is most prominent particularly at high diffraction resolution and for larger asymmetric units.

Zeitschrift für Kristallographie - Crystalline Materials
RWTH Aachen University (DE)
Openalex Percentile: Top 13%
Enzyme Structure and Function
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.