Nuclear export of R-loop by the DDX1 and XPO1 complex promotes senescence-associated secretory phenotype and inflammaging

Cellular senescence contributes to inflammaging in part through the senescence-associated secretory phenotype (SASP). R-loops, three-stranded nucleic acid structures, contribute to innate immune response in cancers; however, the role of R-loops in senescence and inflammaging remains largely unknown. Here we show that nuclear-derived cytoplasmic R-loops promote the SASP and inflammaging. We detect an accumulation of nuclear-derived R-loops in the cytoplasm of senescent cells with an enrichment in alpha-satellite repeats. These cytoplasmic R-loops localize into cytoplasmic chromatin fragments (CCFs) and activate the cGAS–STING innate immune pathway to drive the SASP. We identify the exportin-1 (XPO1)–DEAD-Box helicase 1 (DDX1) complex as essential for the nuclear export of R-loops and their subsequent localization into CCFs. Inhibition of XPO1 with KPT-330 suppresses nuclear R-loop export and its localization into CCFs, attenuates the SASP, mitigates age-associated inflammation and extends healthspan. These findings reveal nuclear export of R-loops as a potential target for suppressing age-associated inflammation. Hao et al. show that DDX1–XPO1-dependent nuclear export of R-loops activates the cGAS–STING pathway and induces the SASP during senescence. Inhibition of XPO1 blocks R-loop export, reduces inflammaging and extends healthspan.

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Publication Details

Journal
Nature Aging
Published
2026-06-16
DOI
https://doi.org/10.1038/s43587-026-01147-6
Primary Topic
interferon and immune responses
Type
article
Field-Weighted Citation Impact
0.00

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article

Nuclear export of R-loop by the DDX1 and XPO1 complex promotes senescence-associated secretory phenotype and inflammaging

Mitsutake Yano, Malgorzata Anna Zal, Andrew V. Kossenkov, Kavitha Sarma et al.
Nature Aging
interferon and immune responses
article

Nuclear export of R-loop by the DDX1 and XPO1 complex promotes senescence-associated secretory phenotype and inflammaging

Mitsutake Yano, Malgorzata Anna Zal, Andrew V. Kossenkov, Kavitha Sarma, Bo Zhao, Hsin‐Yao Tang, Ayumu Matsuoka, Rugang Zhang, Yuan Qi, Hao Xue, Rafał Zieliński, Liping Liao, Qingqing Yan
article en

Abstract

Cellular senescence contributes to inflammaging in part through the senescence-associated secretory phenotype (SASP). R-loops, three-stranded nucleic acid structures, contribute to innate immune response in cancers; however, the role of R-loops in senescence and inflammaging remains largely unknown. Here we show that nuclear-derived cytoplasmic R-loops promote the SASP and inflammaging. We detect an accumulation of nuclear-derived R-loops in the cytoplasm of senescent cells with an enrichment in alpha-satellite repeats. These cytoplasmic R-loops localize into cytoplasmic chromatin fragments (CCFs) and activate the cGAS–STING innate immune pathway to drive the SASP. We identify the exportin-1 (XPO1)–DEAD-Box helicase 1 (DDX1) complex as essential for the nuclear export of R-loops and their subsequent localization into CCFs. Inhibition of XPO1 with KPT-330 suppresses nuclear R-loop export and its localization into CCFs, attenuates the SASP, mitigates age-associated inflammation and extends healthspan. These findings reveal nuclear export of R-loops as a potential target for suppressing age-associated inflammation. Hao et al. show that DDX1–XPO1-dependent nuclear export of R-loops activates the cGAS–STING pathway and induces the SASP during senescence. Inhibition of XPO1 blocks R-loop export, reduces inflammaging and extends healthspan.

Nature Aging
The Wistar Institute (US), The University of Texas MD Anderson Cancer Center (US), Kunming Institute of Zoology (CN), Chinese Academy of Sciences (CN), Chinese Academy of Medical Sciences & Peking Union Medical College (CN), Fu Wai Hospital (CN)
U.S. Department of Defense, Cancer Prevention and Research Institute of Texas, National Institutes of Health, University of Texas MD Anderson Cancer Center, Congressionally Directed Medical Research Programs
Openalex Percentile: Top 15%
interferon and immune responses
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