Involvement of the OB-fold and the C-terminal acidic tip of SSB in its interaction with RecO from <i>Thermus thermophilus</i> HB8

In bacterial homologous recombination, the single-stranded DNA (ssDNA)-binding protein (SSB) coats exposed ssDNA to protect it but simultaneously inhibits RecA filament nucleation. RecO, a recombination mediator, overcomes this inhibition by interacting with SSB and displacing it from ssDNA. This SSB-RecO interaction has long been considered to rely primarily on the conserved C-terminal acidic tip (C-tip) of SSB. Here, using domain-truncated SSB variants from Thermus thermophilus HB8, we show that RecO directly binds both the SSB oligonucleotide/oligosaccharide-binding fold (OB-fold) and the C-tip. These two contacts make distinct contributions to RecO's mediator functions. Arg127 in RecO contributes to recognition of the SSB C-tip and to double-stranded DNA (dsDNA) binding, the latter of which is suppressed by the SSB C-tip. In RecO-mediated ssDNA annealing, the SSB C-tip primarily modulates SSB dynamics on ssDNA rather than directly activating RecO. Moreover, stable assembly of the SSB-RecO-RecR ternary complex requires the SSB C-tip. Our findings support a mechanism in which the SSB C-tip modulates RecO function and governs SSB behavior on ssDNA, whereas the OB-fold provides additional contacts whose functional contributions remain to be elucidated.

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Publication Details

Journal
The Journal of Biochemistry
Published
2026-06-16
DOI
https://doi.org/10.1093/jb/mvag042
Primary Topic
DNA Repair Mechanisms
Type
article
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article

Involvement of the OB-fold and the C-terminal acidic tip of SSB in its interaction with RecO from Thermus thermophilus HB8

K Fukui, Hisaaki Mihara, Masao Inoue, Riku Aono et al.
The Journal of Biochemistry
DNA Repair Mechanisms
article

Involvement of the OB-fold and the C-terminal acidic tip of SSB in its interaction with RecO from Thermus thermophilus HB8

K Fukui, Hisaaki Mihara, Masao Inoue, Riku Aono, Ryoji Masui, Kazuki Kobayashi, Anna Ochi
article en

Abstract

In bacterial homologous recombination, the single-stranded DNA (ssDNA)-binding protein (SSB) coats exposed ssDNA to protect it but simultaneously inhibits RecA filament nucleation. RecO, a recombination mediator, overcomes this inhibition by interacting with SSB and displacing it from ssDNA. This SSB-RecO interaction has long been considered to rely primarily on the conserved C-terminal acidic tip (C-tip) of SSB. Here, using domain-truncated SSB variants from Thermus thermophilus HB8, we show that RecO directly binds both the SSB oligonucleotide/oligosaccharide-binding fold (OB-fold) and the C-tip. These two contacts make distinct contributions to RecO's mediator functions. Arg127 in RecO contributes to recognition of the SSB C-tip and to double-stranded DNA (dsDNA) binding, the latter of which is suppressed by the SSB C-tip. In RecO-mediated ssDNA annealing, the SSB C-tip primarily modulates SSB dynamics on ssDNA rather than directly activating RecO. Moreover, stable assembly of the SSB-RecO-RecR ternary complex requires the SSB C-tip. Our findings support a mechanism in which the SSB C-tip modulates RecO function and governs SSB behavior on ssDNA, whereas the OB-fold provides additional contacts whose functional contributions remain to be elucidated.

The Journal of Biochemistry
Ritsumeikan University (JP), Osaka Metropolitan University (JP), Nara Women's University (JP)
Openalex Percentile: Top 12%
DNA Repair Mechanisms
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