PixelDeck: A local-first media library manager for biomedical imaging
Biomedical imaging workflows generate large collections of histology, fluorescence microscopy, and high-throughput imaging assets that are difficult to organize, search, and reuse using conventional file systems. We present PixelDeck, an open-source, local-first browser application for management of large image and video libraries on commodity workstations. PixelDeck integrates recursive import, SHA-256-based duplicate detection, metadata extraction, thumbnail generation, and full-text search within a responsive interface. The system uses a transparent SQLite-backed architecture with managed filesystem storage and asynchronous processing. Benchmarks on fresh isolated libraries containing up to 1000 assets showed import throughput exceeding 500 files/min and representative median query latencies in the millisecond range.
Authors
- Benjamin L. Kidder (ORCID: https://orcid.org/0000-0002-2039-7143)
Institutions
- Wayne State University (US)
- The Barbara Ann Karmanos Cancer Institute (US)
Publication Details
- Journal
- SoftwareX
- Published
- 2026-06-13
- DOI
- https://doi.org/10.1016/j.softx.2026.102803
- Primary Topic
- Cell Image Analysis Techniques
- Type
- article
- Field-Weighted Citation Impact
- 0.00