PixelDeck: A local-first media library manager for biomedical imaging

Biomedical imaging workflows generate large collections of histology, fluorescence microscopy, and high-throughput imaging assets that are difficult to organize, search, and reuse using conventional file systems. We present PixelDeck, an open-source, local-first browser application for management of large image and video libraries on commodity workstations. PixelDeck integrates recursive import, SHA-256-based duplicate detection, metadata extraction, thumbnail generation, and full-text search within a responsive interface. The system uses a transparent SQLite-backed architecture with managed filesystem storage and asynchronous processing. Benchmarks on fresh isolated libraries containing up to 1000 assets showed import throughput exceeding 500 files/min and representative median query latencies in the millisecond range.

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Publication Details

Journal
SoftwareX
Published
2026-06-13
DOI
https://doi.org/10.1016/j.softx.2026.102803
Primary Topic
Cell Image Analysis Techniques
Type
article
Field-Weighted Citation Impact
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article

PixelDeck: A local-first media library manager for biomedical imaging

Benjamin L. Kidder
SoftwareX
Cell Image Analysis Techniques
article

PixelDeck: A local-first media library manager for biomedical imaging

Benjamin L. Kidder
article en

Abstract

Biomedical imaging workflows generate large collections of histology, fluorescence microscopy, and high-throughput imaging assets that are difficult to organize, search, and reuse using conventional file systems. We present PixelDeck, an open-source, local-first browser application for management of large image and video libraries on commodity workstations. PixelDeck integrates recursive import, SHA-256-based duplicate detection, metadata extraction, thumbnail generation, and full-text search within a responsive interface. The system uses a transparent SQLite-backed architecture with managed filesystem storage and asynchronous processing. Benchmarks on fresh isolated libraries containing up to 1000 assets showed import throughput exceeding 500 files/min and representative median query latencies in the millisecond range.

SoftwareXVol. 35
Wayne State University (US), The Barbara Ann Karmanos Cancer Institute (US)
Industry, innovation and infrastructure
Openalex Percentile: Top 5%
Cell Image Analysis Techniques
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PixelDeck: A local-first media library manager for biomedical imaging — Benjamin L. Kidder · SoftwareX (2026) | TGRS Research Map | TGRS