The genome sequence of the three-spined stickleback, Gasterosteus aculeatus Linnaeus, 1758 (Perciformes: Gasterosteidae)

<ns5:p> We present a genome assembly from an individual male <ns5:italic>Gasterosteus aculeatus</ns5:italic> (three-spined stickleback; Chordata; Actinopteri; Perciformes; Gasterosteidae). The assembly contains two haplotypes with total lengths of 511.14 megabases and 457.35 megabases. Most of haplotype 1 (97.82%) is scaffolded into 22 chromosomal pseudomolecules, including the X and Y sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 16.56 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland. </ns5:p>

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Publication Details

Journal
Wellcome Open Research
Published
2026-06-13
DOI
https://doi.org/10.12688/wellcomeopenres.26720.1
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
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article

The genome sequence of the three-spined stickleback, Gasterosteus aculeatus Linnaeus, 1758 (Perciformes: Gasterosteidae)

A Hardy Smith, Bernd Hänfling, Tree of Life Core Informatics collective
Wellcome Open Research
Genomics and Phylogenetic Studies
article

The genome sequence of the three-spined stickleback, Gasterosteus aculeatus Linnaeus, 1758 (Perciformes: Gasterosteidae)

A Hardy Smith, Bernd Hänfling, Tree of Life Core Informatics collective
article en

Abstract

<ns5:p> We present a genome assembly from an individual male <ns5:italic>Gasterosteus aculeatus</ns5:italic> (three-spined stickleback; Chordata; Actinopteri; Perciformes; Gasterosteidae). The assembly contains two haplotypes with total lengths of 511.14 megabases and 457.35 megabases. Most of haplotype 1 (97.82%) is scaffolded into 22 chromosomal pseudomolecules, including the X and Y sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 16.56 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland. </ns5:p>

Wellcome Open ResearchVol. 11
University of Hull (GB), University of the Highlands and Islands (GB)
Life in Land
Openalex Percentile: Top 9%
Genomics and Phylogenetic Studies
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