A new method for augmenting short time series, with application to pain events in sickle cell disease

Researchers across different fields, including but not limited to ecology, biology, and healthcare, often face the challenge of sparse data. Such sparsity can lead to uncertainties, estimation difficulties, and potential biases in modeling. Here we introduce a novel data augmentation method that combines multiple sparse time series datasets when they share similar statistical properties, thereby improving parameter estimation and model selection reliability. We demonstrate the effectiveness of this approach through validation studies comparing Hawkes and Poisson processes, followed by application to subjective pain dynamics in patients with sickle cell disease (SCD), a condition affecting millions worldwide, particularly those of African, Mediterranean, Middle Eastern, and Indian descent.

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Publication Details

Journal
PLoS Computational Biology
Published
2026-06-12
DOI
https://doi.org/10.1371/journal.pcbi.1014389
Primary Topic
Hemoglobinopathies and Related Disorders
Type
article
Field-Weighted Citation Impact
0.00

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article

A new method for augmenting short time series, with application to pain events in sickle cell disease

Kumar Utkarsh, Nirmish Shah, Tanvi Banerjee, Daniel M. Abrams
PLoS Computational Biology
Hemoglobinopathies and Related Disorders
article

A new method for augmenting short time series, with application to pain events in sickle cell disease

Kumar Utkarsh, Nirmish Shah, Tanvi Banerjee, Daniel M. Abrams
article en

Abstract

Researchers across different fields, including but not limited to ecology, biology, and healthcare, often face the challenge of sparse data. Such sparsity can lead to uncertainties, estimation difficulties, and potential biases in modeling. Here we introduce a novel data augmentation method that combines multiple sparse time series datasets when they share similar statistical properties, thereby improving parameter estimation and model selection reliability. We demonstrate the effectiveness of this approach through validation studies comparing Hawkes and Poisson processes, followed by application to subjective pain dynamics in patients with sickle cell disease (SCD), a condition affecting millions worldwide, particularly those of African, Mediterranean, Middle Eastern, and Indian descent.

PLoS Computational BiologyVol. 22(6)
Northwestern University (US), Duke University (US), Wright State University (US)
Northwestern University, Colorado School of Mines, National Institutes of Health, National Center for Complementary and Integrative Health
Openalex Percentile: Top 7%
Hemoglobinopathies and Related Disorders
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A new method for augmenting short time series, with application to pain events in sickle cell disease — Kumar Utkarsh, Nirmish Shah, et al. · PLoS Computational Biology (2026) | TGRS Research Map | TGRS