Darlyne AI: A Deterministic, Structural Retrieval Engine for PGx Exploration

The exponential growth of pharmacogenomic (PGx) data has created a heavily siloed landscape, forcing researchers to manually synthesize findings across disparate databases. While artificial intelligence and Retrieval-Augmented Generation (RAG) offer potential solutions to this fragmentation, current probabilistic models suffer from severe limitations in biomedical contexts, primarily "hallucinations" and inaccurate source retrieval. We propose a solution to the PGx data fragmentation problem using a deterministic, structural retrieval architecture. By aggregating proven clinical topologies into a unified PostgreSQL matrix and restricting the Large Language Model (LLM) strictly to these verified structural edges, we eliminate probabilistic guessing. The resulting platform, Darlyne, serves as a centralized, hallucination-free knowledge graph that democratizes precision medicine research.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-06-12
DOI
https://doi.org/10.5281/zenodo.20668375
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
Field-Weighted Citation Impact
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article

Darlyne AI: A Deterministic, Structural Retrieval Engine for PGx Exploration

Demesvar Destin, Destin Genomics
Zenodo (CERN European Organization for Nuclear Research)
Biomedical Text Mining and Ontologies
article

Darlyne AI: A Deterministic, Structural Retrieval Engine for PGx Exploration

Demesvar Destin, Destin Genomics
article en

Abstract

The exponential growth of pharmacogenomic (PGx) data has created a heavily siloed landscape, forcing researchers to manually synthesize findings across disparate databases. While artificial intelligence and Retrieval-Augmented Generation (RAG) offer potential solutions to this fragmentation, current probabilistic models suffer from severe limitations in biomedical contexts, primarily "hallucinations" and inaccurate source retrieval. We propose a solution to the PGx data fragmentation problem using a deterministic, structural retrieval architecture. By aggregating proven clinical topologies into a unified PostgreSQL matrix and restricting the Large Language Model (LLM) strictly to these verified structural edges, we eliminate probabilistic guessing. The resulting platform, Darlyne, serves as a centralized, hallucination-free knowledge graph that democratizes precision medicine research.

Zenodo (CERN European Organization for Nuclear Research)
ID Genomics (United States) (US), Genomics England (GB)
Quality Education
Openalex Percentile: Top 10%
Biomedical Text Mining and Ontologies
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