PyQuiverHS: A Web Tool for Computing Isotope Effects

ABSTRACT Predicting isotope effects using electronic structure calculations is widely done, but current software options can present a barrier for some chemists, depending upon their needs and software/programming proficiency. Building upon existing code bases, we have developed PyQuiverHS as a free web tool ( www.isotope‐effects.com ) to provide ready access to kinetic and equilibrium isotope effect (EIE) calculations employing the Bigeleisen–Mayer (B‐M) and enthalpy–entropy ( H‐S ) partition functions. A graphical user interface assists in setting up a configuration file, which contains scaling factor and isotope substitution information. After uploading the configuration file and Gaussian frequency jobs for the unlabeled system, users execute a kinetic isotope effect (KIE) or EIE calculation at a particular temperature or range of temperatures with a defined increment. Wigner and Bell tunneling corrections are provided for KIE calculations. Overall KIEs or EIEs and their contributing B‐M and H‐S terms are compiled in auto‐downloaded comma‐separated values (*.csv) and plain text files. Automating the process with PyQuiverHS is a significant gain in efficiency, as previous methods for these types of calculations have relied on spreadsheets, which require time‐intensive data manipulation. We demonstrate the utility of PyQuiverHS by calculating temperature‐dependent conformational KIEs in 9,10‐dihydro‐4,5‐dimethylphenanthrene ( 1 ), a doubly bridged biphenyl derivative ( 2 ), [2.2]‐metaparacyclophane ( 3 ), a secondary KIE for the S N 2 reaction of chloride with methyl bromide ( 4 ), and an EIE for the interconversion of chair conformations of 1,1,3,3‐tetramethylcyclohexane ( 6 ).

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Publication Details

Journal
Journal of Physical Organic Chemistry
Published
2026-08-21
DOI
https://doi.org/10.1002/poc.70099
Primary Topic
Chemical Reactions and Isotopes
Type
article
Field-Weighted Citation Impact
0.00

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article

PyQuiverHS: A Web Tool for Computing Isotope Effects

Daniel J. O’Leary, Gianmarc Grazioli, Andrew Ly, Calvin T. Nguyen et al.
Journal of Physical Organic Chemistry
Chemical Reactions and Isotopes
article

PyQuiverHS: A Web Tool for Computing Isotope Effects

Daniel J. O’Leary, Gianmarc Grazioli, Andrew Ly, Calvin T. Nguyen, Anvitha Mattapalli, Dianoosh Sabetnejad
article en

Abstract

ABSTRACT Predicting isotope effects using electronic structure calculations is widely done, but current software options can present a barrier for some chemists, depending upon their needs and software/programming proficiency. Building upon existing code bases, we have developed PyQuiverHS as a free web tool ( www.isotope‐effects.com ) to provide ready access to kinetic and equilibrium isotope effect (EIE) calculations employing the Bigeleisen–Mayer (B‐M) and enthalpy–entropy ( H‐S ) partition functions. A graphical user interface assists in setting up a configuration file, which contains scaling factor and isotope substitution information. After uploading the configuration file and Gaussian frequency jobs for the unlabeled system, users execute a kinetic isotope effect (KIE) or EIE calculation at a particular temperature or range of temperatures with a defined increment. Wigner and Bell tunneling corrections are provided for KIE calculations. Overall KIEs or EIEs and their contributing B‐M and H‐S terms are compiled in auto‐downloaded comma‐separated values (*.csv) and plain text files. Automating the process with PyQuiverHS is a significant gain in efficiency, as previous methods for these types of calculations have relied on spreadsheets, which require time‐intensive data manipulation. We demonstrate the utility of PyQuiverHS by calculating temperature‐dependent conformational KIEs in 9,10‐dihydro‐4,5‐dimethylphenanthrene ( 1 ), a doubly bridged biphenyl derivative ( 2 ), [2.2]‐metaparacyclophane ( 3 ), a secondary KIE for the S N 2 reaction of chloride with methyl bromide ( 4 ), and an EIE for the interconversion of chair conformations of 1,1,3,3‐tetramethylcyclohexane ( 6 ).

Journal of Physical Organic ChemistryVol. 39(10)
Pomona College (US), San Jose State University (US)
Pomona College, National Institutes of Health
Industry, innovation and infrastructure
Openalex Percentile: Top 45%
Chemical Reactions and Isotopes
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