Carbapenem resistance mediated by <i>bla</i> <sub>NDM-13</sub> in a highly drug-resistant <i>Salmonella</i> Stanley ST29 strain in China

ABSTRACT The rise of carbapenem-resistant Enterobacterales presents a substantial global public health challenge. While carbapenem-resistant Salmonella is rarely reported in clinical settings, this study characterizes a carbapenem resistance mediated by bla NDM-13 Salmonella Stanley strain SAL22057, isolated from the fecal sample of a pediatric patient with diarrhea and fever. We determined antimicrobial susceptibility, conducted genomic characterization, and assessed plasmid conjugation. Antimicrobial susceptibility testing showed that SAL22057 was resistant to meropenem (minimum inhibitory concentration [MIC] 32 μg/mL) and imipenem (MIC 16 μg/mL). Genotyping analysis identified SAL22057 as belonging to ST29, and it was found to be multidrug-resistant and to carry numerous virulence genes. Whole-genome sequencing and plasmid analysis identified that bla NDM-13 was located on pSAL22057-NDM (IncI1 α ), while a distinct plasmid, pSAL22057-OXA (IncHI2), harbored multiple antimicrobial resistance genes, including bla OXA-10 . Conjugation experiments revealed that bla NDM-13 was transferable to Escherichia coli C600. We show that IS 1294 likely mediates bla NDM-13 mobilization, with its insertion influencing gene transfer. Furthermore, the consistent flanking of several resistance genes by IS 26 elements indicates that IS 26 -mediated horizontal gene transfer is a key mechanism driving the dissemination of these determinants and genomic rearrangements within Enterobacteriaceae . IMPORTANCE The emergence of carbapenem-resistant Enterobacterales poses a global health threat. This study identified a carbapenem-resistant Salmonella Stanley strain, SAL22057, from a pediatric patient, which carried the carbapenemase gene bla NDM-13 . The genotyping revealed that SAL22057 is ST29, displaying a concerning multidrug-resistant phenotype along with several virulence determinants. Alarmingly, this strain exhibits high-level resistance to meropenem (minimum inhibitory concentration [MIC] 32 μg/mL) and imipenem (MIC 16 μg/mL). Conjugation experiments confirm that bla NDM-13 is transferable to Escherichia coli C600, signaling a clear pathway for resistance dissemination among Enterobacteriaceae . We demonstrate that IS 1294 likely mobilizes bla NDM-13 , while IS 26 consistently flanks multiple resistance genes, providing mechanistic evidence that IS 26 -mediated transposition is accelerating the spread of resistance genes in clinical pathogens.

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Journal
Microbiology Spectrum
Published
2026-06-09
DOI
https://doi.org/10.1128/spectrum.03207-24
Primary Topic
Antibiotic Resistance in Bacteria
Type
article
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article

Carbapenem resistance mediated by bla NDM-13 in a highly drug-resistant Salmonella Stanley ST29 strain in China

Peipei Zhao, Minghui Zhen, Lu Xu, Juanjuan Zhou et al.
Microbiology Spectrum
Antibiotic Resistance in Bacteria
article

Carbapenem resistance mediated by bla NDM-13 in a highly drug-resistant Salmonella Stanley ST29 strain in China

Peipei Zhao, Minghui Zhen, Lu Xu, Juanjuan Zhou, Kaijie Gao, Jie Yang, Dongyu Zhang, Ke Li, Hongna Shi
article en

Abstract

ABSTRACT The rise of carbapenem-resistant Enterobacterales presents a substantial global public health challenge. While carbapenem-resistant Salmonella is rarely reported in clinical settings, this study characterizes a carbapenem resistance mediated by bla NDM-13 Salmonella Stanley strain SAL22057, isolated from the fecal sample of a pediatric patient with diarrhea and fever. We determined antimicrobial susceptibility, conducted genomic characterization, and assessed plasmid conjugation. Antimicrobial susceptibility testing showed that SAL22057 was resistant to meropenem (minimum inhibitory concentration [MIC] 32 μg/mL) and imipenem (MIC 16 μg/mL). Genotyping analysis identified SAL22057 as belonging to ST29, and it was found to be multidrug-resistant and to carry numerous virulence genes. Whole-genome sequencing and plasmid analysis identified that bla NDM-13 was located on pSAL22057-NDM (IncI1 α ), while a distinct plasmid, pSAL22057-OXA (IncHI2), harbored multiple antimicrobial resistance genes, including bla OXA-10 . Conjugation experiments revealed that bla NDM-13 was transferable to Escherichia coli C600. We show that IS 1294 likely mediates bla NDM-13 mobilization, with its insertion influencing gene transfer. Furthermore, the consistent flanking of several resistance genes by IS 26 elements indicates that IS 26 -mediated horizontal gene transfer is a key mechanism driving the dissemination of these determinants and genomic rearrangements within Enterobacteriaceae . IMPORTANCE The emergence of carbapenem-resistant Enterobacterales poses a global health threat. This study identified a carbapenem-resistant Salmonella Stanley strain, SAL22057, from a pediatric patient, which carried the carbapenemase gene bla NDM-13 . The genotyping revealed that SAL22057 is ST29, displaying a concerning multidrug-resistant phenotype along with several virulence determinants. Alarmingly, this strain exhibits high-level resistance to meropenem (minimum inhibitory concentration [MIC] 32 μg/mL) and imipenem (MIC 16 μg/mL). Conjugation experiments confirm that bla NDM-13 is transferable to Escherichia coli C600, signaling a clear pathway for resistance dissemination among Enterobacteriaceae . We demonstrate that IS 1294 likely mobilizes bla NDM-13 , while IS 26 consistently flanks multiple resistance genes, providing mechanistic evidence that IS 26 -mediated transposition is accelerating the spread of resistance genes in clinical pathogens.

Microbiology Spectrum
Zhengzhou University (CN), Zhengzhou Children's Hospital (CN)
Good health and well-being
Openalex Percentile: Top 12%
Antibiotic Resistance in Bacteria
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