Mutagenic Survey of Key Residues of NifB Involved in Radical SAM‐Dependent Nitrogenase Cofactor Assembly

] modules-RS, K1, and K2-that mediate fusion of K1 and K2 via radical SAM chemistry at RS, but the identities and functions of cluster ligands and SAM-binding residues have remained unclear. Here, we report a systematic mutagenic analysis of key residues of NifB. Combining EPR spectroscopy with biochemical assays, we verify C18, H31, and C115 as ligands of the K1-cluster, and C260 and C263 as ligands of the K2-cluster. We further reveal a functional asymmetry in which the K1-module controls the initial sensing and orientation of SAM, whereas the K2-module acts as the catalytic center for radical-driven cluster fusion. Mutations in SAM-binding residues (T139, N194, P225) uncouple substrate binding from catalysis, while alteration of a surface residue (C240) enhances activity, implicating conformational gating in catalysis. Together, these findings define a functionally differentiated RS-K1-K2 triad and establish a mechanistic framework for radical SAM-dependent L-cluster assembly.

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Publication Details

Journal
ChemBioChem
Published
2026-05-31
DOI
https://doi.org/10.1002/cbic.70400
Primary Topic
Metalloenzymes and iron-sulfur proteins
Type
article
Field-Weighted Citation Impact
0.00

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article

Mutagenic Survey of Key Residues of NifB Involved in Radical SAM‐Dependent Nitrogenase Cofactor Assembly

Robert Quechol, Calder Duffin, Chi Chung Lee, Yimo Yang et al.
ChemBioChem
Metalloenzymes and iron-sulfur proteins
article

Mutagenic Survey of Key Residues of NifB Involved in Radical SAM‐Dependent Nitrogenase Cofactor Assembly

Robert Quechol, Calder Duffin, Chi Chung Lee, Yimo Yang, Yilin Hu, Markus W. Ribbe
article en

Abstract

] modules-RS, K1, and K2-that mediate fusion of K1 and K2 via radical SAM chemistry at RS, but the identities and functions of cluster ligands and SAM-binding residues have remained unclear. Here, we report a systematic mutagenic analysis of key residues of NifB. Combining EPR spectroscopy with biochemical assays, we verify C18, H31, and C115 as ligands of the K1-cluster, and C260 and C263 as ligands of the K2-cluster. We further reveal a functional asymmetry in which the K1-module controls the initial sensing and orientation of SAM, whereas the K2-module acts as the catalytic center for radical-driven cluster fusion. Mutations in SAM-binding residues (T139, N194, P225) uncouple substrate binding from catalysis, while alteration of a surface residue (C240) enhances activity, implicating conformational gating in catalysis. Together, these findings define a functionally differentiated RS-K1-K2 triad and establish a mechanistic framework for radical SAM-dependent L-cluster assembly.

ChemBioChemVol. 27(11)
University of California, Irvine (US), Irvine University (US)
National Institute of General Medical Sciences
Openalex Percentile: Top 17%
Metalloenzymes and iron-sulfur proteins
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