Artificial intelligence–enabled analysis of prognostic PI3K pathway alterations in African American colorectal cancer patients treated with FOLFOX.

e15511 Background: The phosphoinositide 3-kinase (PI3K) signaling pathway regulates tumor growth, metabolism, and treatment response in colorectal cancer (CRC). African American (AA) patients experience a disproportionate CRC burden yet remain underrepresented in molecular studies assessing chemotherapy-associated biomarkers. The prognostic significance of PI3K pathway alterations across ancestry, age at diagnosis, and FOLFOX exposure remains poorly defined. Methods: We performed a retrospective analysis of 2,562 CRC patients with genomic, clinical, and treatment data from public datasets. Cohorts were stratified by ancestry (AA vs. non-Hispanic White [NHW]), age at diagnosis ( < 50 vs. ≥50 years), and FOLFOX treatment. PI3K pathway alterations (including MTOR, AKT3, and PPP2R1A) were analyzed using Fisher’s exact test. Overall survival (OS) was assessed by Kaplan–Meier and Cox models. AI-HOPE conversational AI agents enabled reproducible cohort stratification and integrated analyses. Results: FOLFOX-exposed AA late-onset CRC (LOCRC) tumors showed fewer mTOR mutations than unexposed tumors (0% vs. 9.9%, p = 0.04). In NHW early-onset CRC (EOCRC), FOLFOX exposure was associated with lower AKT3 mutation frequency (0.8% vs. 3.0%, p = 0.04). NHW LOCRC tumors treated with FOLFOX had reduced PPP2R1A (1.7% vs. 3.5%, p = 0.03) and mTOR mutations (4.5% vs. 7.8%, p = 0.007). PI3K pathway alterations were associated with improved OS in AA LOCRC not treated with FOLFOX (p = 0.039), NHW EOCRC treated with FOLFOX (p = 0.0008), and NHW LOCRC not treated with FOLFOX (p = 0.005). However, PI3K pathway alterations did not have prognostic significance among FOLFOX-treated or -untreated AA EOCRC patients and among FOLFOX-treated AA LOCRC patients. Conclusions: PI3K pathway alterations demonstrate ancestry-, age-, and treatment-specific prognostic associations in CRC. AI-enabled, ancestry-aware analyses highlight the PI3K pathway as a context-dependent biomarker and support the integration of artificial intelligence to advance equitable precision oncology.

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Journal
Journal of Clinical Oncology
Published
2026-05-28
DOI
https://doi.org/10.1200/jco.2026.44.16_suppl.e15511
Primary Topic
Cancer Genomics and Diagnostics
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article
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article

Artificial intelligence–enabled analysis of prognostic PI3K pathway alterations in African American colorectal cancer patients treated with FOLFOX.

Tsion Minas, Enrique Velazquez Villarreal, Sophia Manjarrez, Brigette Waldrup et al.
Journal of Clinical Oncology
Cancer Genomics and Diagnostics
article

Artificial intelligence–enabled analysis of prognostic PI3K pathway alterations in African American colorectal cancer patients treated with FOLFOX.

Tsion Minas, Enrique Velazquez Villarreal, Sophia Manjarrez, Brigette Waldrup, Francisco G. Carranza
article en

Abstract

e15511 Background: The phosphoinositide 3-kinase (PI3K) signaling pathway regulates tumor growth, metabolism, and treatment response in colorectal cancer (CRC). African American (AA) patients experience a disproportionate CRC burden yet remain underrepresented in molecular studies assessing chemotherapy-associated biomarkers. The prognostic significance of PI3K pathway alterations across ancestry, age at diagnosis, and FOLFOX exposure remains poorly defined. Methods: We performed a retrospective analysis of 2,562 CRC patients with genomic, clinical, and treatment data from public datasets. Cohorts were stratified by ancestry (AA vs. non-Hispanic White [NHW]), age at diagnosis ( < 50 vs. ≥50 years), and FOLFOX treatment. PI3K pathway alterations (including MTOR, AKT3, and PPP2R1A) were analyzed using Fisher’s exact test. Overall survival (OS) was assessed by Kaplan–Meier and Cox models. AI-HOPE conversational AI agents enabled reproducible cohort stratification and integrated analyses. Results: FOLFOX-exposed AA late-onset CRC (LOCRC) tumors showed fewer mTOR mutations than unexposed tumors (0% vs. 9.9%, p = 0.04). In NHW early-onset CRC (EOCRC), FOLFOX exposure was associated with lower AKT3 mutation frequency (0.8% vs. 3.0%, p = 0.04). NHW LOCRC tumors treated with FOLFOX had reduced PPP2R1A (1.7% vs. 3.5%, p = 0.03) and mTOR mutations (4.5% vs. 7.8%, p = 0.007). PI3K pathway alterations were associated with improved OS in AA LOCRC not treated with FOLFOX (p = 0.039), NHW EOCRC treated with FOLFOX (p = 0.0008), and NHW LOCRC not treated with FOLFOX (p = 0.005). However, PI3K pathway alterations did not have prognostic significance among FOLFOX-treated or -untreated AA EOCRC patients and among FOLFOX-treated AA LOCRC patients. Conclusions: PI3K pathway alterations demonstrate ancestry-, age-, and treatment-specific prognostic associations in CRC. AI-enabled, ancestry-aware analyses highlight the PI3K pathway as a context-dependent biomarker and support the integration of artificial intelligence to advance equitable precision oncology.

Journal of Clinical OncologyVol. 44(16_suppl)
City Of Hope National Medical Center (US), Johns Hopkins University (US), City of Hope (US)
Good health and well-being
Openalex Percentile: Top 7%
Cancer Genomics and Diagnostics
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