Impact of population-specific <i>KRAS</i> alterations on therapeutic vulnerabilities in cholangiocarcinoma: Evidence from a global meta-analysis.

e16494 Background: Cholangiocarcinoma (CCA) exhibits marked molecular heterogeneity with significant geographic variation, limiting the generalizability of therapeutic strategies. While multiple genomic studies have characterized CCA, a comprehensive cross-country synthesis of patient-level mutational and clinically actionable alterations remains limited. We performed a meta-analysis integrating global sequencing datasets to define the genomic landscape, pathway dysregulation, and therapeutic relevance of somatic mutations in CCA. Methods: A systematic literature search of PubMed and Google Scholar identified sequencing-based CCA studies published within the last five years. Studies with patient-level clinical and mutational data were included, while those lacking detailed annotations were excluded. Somatic mutation data from 11 eligible studies across 9 countries were curated and integrated with publicly available MSK and TCGA CCA cohorts. Co-occurrence and mutual exclusivity were evaluated using Fisher’s exact test with Benjamini-Hochberg correction (q &lt; 0.05). Pathway enrichment analysis was conducted using Enrichr with the Panther 2016 gene set. Therapeutic actionability was assessed using OncoKB classification. Results: A total of 1,613 CCA samples were analyzed. TP53 (39%) and KRAS (22%) were the most frequently mutated genes across all cohorts. Significant country-specific differences were observed, with TP53 (40%) and KRAS (22%) mutation frequencies in the Indian cohort being significantly higher than those in the MSK ( TP53 : 18.16%; KRAS : 10.45%) and TCGA cohorts ( TP53 : 9.68%; KRAS : 10.45%). Additionally, population-specific KRAS variants (p.G12R, p.G12V, p.G12D) observed exclusively in Indian patients and classified as Level 2 actionable alterations. Compared with the Indian cohort ( IDH1 : 14%; SMAD4 : 8%), the MSK dataset showed a higher IDH1 mutation frequency (22.89% vs 7%, p &lt; 0.01) and a lower SMAD4 mutation frequency (2.49% vs 12%, p &lt; 0.01). Distinct co-occurrence and mutual exclusivity patterns were observed between intrahepatic and extrahepatic CCA, with KRAS showing mutual exclusivity with IDH1 , BRAF , and BAP1 , particularly in iCCA. Conclusions: This comprehensive meta-analysis highlights significant geographic heterogeneity in CCA genomics, with KRAS emerging as a dominant and clinically relevant driver in the Indian population. The distinct KRAS mutation spectrum observed in Indian patients underscores the need for region-specific precision oncology strategies and supports the evaluation of KRAS -directed therapies in this population.

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Journal
Journal of Clinical Oncology
Published
2026-05-28
DOI
https://doi.org/10.1200/jco.2026.44.16_suppl.e16494
Primary Topic
Cholangiocarcinoma and Gallbladder Cancer Studies
Type
article
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article

Impact of population-specific KRAS alterations on therapeutic vulnerabilities in cholangiocarcinoma: Evidence from a global meta-analysis.

Rajan Datar, Janani Sambath, Amol Patel, Chetan Madre et al.
Journal of Clinical Oncology
Cholangiocarcinoma and Gallbladder Cancer Studies
article

Impact of population-specific KRAS alterations on therapeutic vulnerabilities in cholangiocarcinoma: Evidence from a global meta-analysis.

Rajan Datar, Janani Sambath, Amol Patel, Chetan Madre, Irene A. George, Darshana Patil, Kumar Prabash, Anjali Parab, Rajas Patel, Prashant Agrawal, Pritam Kataria, Abhishek Anand, Aditya V. Shreenivas, Darshit Kalpeshkumar Shah, Sewanti Atul Limaye, Milind M. Javle, Manju Purohit, Satish Sharma
article en

Abstract

e16494 Background: Cholangiocarcinoma (CCA) exhibits marked molecular heterogeneity with significant geographic variation, limiting the generalizability of therapeutic strategies. While multiple genomic studies have characterized CCA, a comprehensive cross-country synthesis of patient-level mutational and clinically actionable alterations remains limited. We performed a meta-analysis integrating global sequencing datasets to define the genomic landscape, pathway dysregulation, and therapeutic relevance of somatic mutations in CCA. Methods: A systematic literature search of PubMed and Google Scholar identified sequencing-based CCA studies published within the last five years. Studies with patient-level clinical and mutational data were included, while those lacking detailed annotations were excluded. Somatic mutation data from 11 eligible studies across 9 countries were curated and integrated with publicly available MSK and TCGA CCA cohorts. Co-occurrence and mutual exclusivity were evaluated using Fisher’s exact test with Benjamini-Hochberg correction (q &lt; 0.05). Pathway enrichment analysis was conducted using Enrichr with the Panther 2016 gene set. Therapeutic actionability was assessed using OncoKB classification. Results: A total of 1,613 CCA samples were analyzed. TP53 (39%) and KRAS (22%) were the most frequently mutated genes across all cohorts. Significant country-specific differences were observed, with TP53 (40%) and KRAS (22%) mutation frequencies in the Indian cohort being significantly higher than those in the MSK ( TP53 : 18.16%; KRAS : 10.45%) and TCGA cohorts ( TP53 : 9.68%; KRAS : 10.45%). Additionally, population-specific KRAS variants (p.G12R, p.G12V, p.G12D) observed exclusively in Indian patients and classified as Level 2 actionable alterations. Compared with the Indian cohort ( IDH1 : 14%; SMAD4 : 8%), the MSK dataset showed a higher IDH1 mutation frequency (22.89% vs 7%, p &lt; 0.01) and a lower SMAD4 mutation frequency (2.49% vs 12%, p &lt; 0.01). Distinct co-occurrence and mutual exclusivity patterns were observed between intrahepatic and extrahepatic CCA, with KRAS showing mutual exclusivity with IDH1 , BRAF , and BAP1 , particularly in iCCA. Conclusions: This comprehensive meta-analysis highlights significant geographic heterogeneity in CCA genomics, with KRAS emerging as a dominant and clinically relevant driver in the Indian population. The distinct KRAS mutation spectrum observed in Indian patients underscores the need for region-specific precision oncology strategies and supports the evaluation of KRAS -directed therapies in this population.

Journal of Clinical OncologyVol. 44(16_suppl)
The University of Texas MD Anderson Cancer Center (US), Sir H.N. Reliance Foundation Hospital and Research Centre (IN), Tata Memorial Hospital (IN), Ruxmaniben Deepchand Gardi Medical College (IN), City of Hope (US), Patrimonio Nacional (ES), Datar Cancer Genetics (India) (IN), Bharat Serums and Vaccines (India) (IN), Institute of Bioinformatics (IN), Command Hospital (IN), Manipal Hospital (IN)
Partnerships for the goals
Openalex Percentile: Top 5%
Cholangiocarcinoma and Gallbladder Cancer Studies
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