Digital Registrar: A Schema-First Framework for Multi-Cancer Privacy-Preserving Pathology Abstraction via Local LLMs

Background/Objectives: Free-text surgical pathology reports hinder automated cancer registry entry and secondary analytics. This study introduces a clinically governed schema layer for interoperability, testing whether a locally-deployable Large Language Model (LLM) pipeline can deliver robust registry-grade extraction across institutions. Methods: We developed a College of American Pathologists (CAP)-aligned clinical ontology encompassing 10 cancer types, 192 per-organ scalar fields, key biomarkers, and nested structures for lymph nodes and margins. Encoded via Declarative Self-improving Python (DSPy) signatures with grammar-constrained decoding using DSPy v3.2.1, this model-agnostic pipeline was benchmarked on 893 internal reports against a pathologist-adjudicated gold standard. External validation utilized 242 The Cancer Genome Atlas (TCGA) reports. Hardware feasibility was confirmed on a single 48-gigabyte (GB) Graphics Processing Unit (GPU), ensuring suitability for privacy-preserving on-premises deployment. Results: Using the gpt-oss-20b model, the framework achieved 92.0% macro-mean exact-match accuracy on internal data, demonstrating near-perfect run-to-run reliability. Critical prognostic indicators, including breast estrogen receptor/progesterone receptor (ER/PR) (98.7%) and margin positivity (>93%), maintained high fidelity. On the external TCGA cohort, accuracy was 77.5%, rising to 88.0% after excluding structurally silent fields absent in older narratives. Operationally, the model processed reports in 40–70 s, optimally balancing speed and accuracy. Conclusions: This schema-first abstraction layer successfully decouples clinical logic from specific Artificial Intelligence (AI) models. By reliably transforming narrative reports into machine-readable structures, it establishes a portable privacy-preserving foundation for automated cancer surveillance, institutional data reuse, and future multimodal clinical systems.

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Publication Details

Journal
Diagnostics
Published
2026-05-27
DOI
https://doi.org/10.3390/diagnostics16111644
Primary Topic
AI in cancer detection
Type
article
Field-Weighted Citation Impact
0.00

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article

Digital Registrar: A Schema-First Framework for Multi-Cancer Privacy-Preserving Pathology Abstraction via Local LLMs

Li-Ju Shiu, Yen-Wei Chu, Hung-Kai Chen, Pau‐Choo Chung et al.
Diagnostics
AI in cancer detection
article

Digital Registrar: A Schema-First Framework for Multi-Cancer Privacy-Preserving Pathology Abstraction via Local LLMs

Li-Ju Shiu, Yen-Wei Chu, Hung-Kai Chen, Pau‐Choo Chung, Ying-Lung Liu, H-C Chang, Kai-Po Chang, Po‐Yen Tseng, Nan-Haw Chow, Chen-Yuan Lin
article en

Abstract

Background/Objectives: Free-text surgical pathology reports hinder automated cancer registry entry and secondary analytics. This study introduces a clinically governed schema layer for interoperability, testing whether a locally-deployable Large Language Model (LLM) pipeline can deliver robust registry-grade extraction across institutions. Methods: We developed a College of American Pathologists (CAP)-aligned clinical ontology encompassing 10 cancer types, 192 per-organ scalar fields, key biomarkers, and nested structures for lymph nodes and margins. Encoded via Declarative Self-improving Python (DSPy) signatures with grammar-constrained decoding using DSPy v3.2.1, this model-agnostic pipeline was benchmarked on 893 internal reports against a pathologist-adjudicated gold standard. External validation utilized 242 The Cancer Genome Atlas (TCGA) reports. Hardware feasibility was confirmed on a single 48-gigabyte (GB) Graphics Processing Unit (GPU), ensuring suitability for privacy-preserving on-premises deployment. Results: Using the gpt-oss-20b model, the framework achieved 92.0% macro-mean exact-match accuracy on internal data, demonstrating near-perfect run-to-run reliability. Critical prognostic indicators, including breast estrogen receptor/progesterone receptor (ER/PR) (98.7%) and margin positivity (>93%), maintained high fidelity. On the external TCGA cohort, accuracy was 77.5%, rising to 88.0% after excluding structurally silent fields absent in older narratives. Operationally, the model processed reports in 40–70 s, optimally balancing speed and accuracy. Conclusions: This schema-first abstraction layer successfully decouples clinical logic from specific Artificial Intelligence (AI) models. By reliably transforming narrative reports into machine-readable structures, it establishes a portable privacy-preserving foundation for automated cancer surveillance, institutional data reuse, and future multimodal clinical systems.

DiagnosticsVol. 16(11)
National Taiwan University of Science and Technology (TW), National Chung Hsing University (TW), China Medical University (TW), National Chi Nan University (TW), AUG Signals (Canada) (CA), China Medical University Hospital (TW), National Cheng Kung University (TW)
National Science and Technology Council, China Medical University Hospital
Quality Education
Openalex Percentile: Top 4%
AI in cancer detection
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