Adaptive Tensor Train Metadynamics for High-Dimensional Free Energy Exploration

A key challenge for molecular dynamics simulations is efficient exploration of free energy landscapes over relevant collective variables (CV). Common methods for enhancing sampling become prohibitively inefficient beyond only a few CVs; in the case of the widely used metadynamics method, the computational cost of evaluating and storing the bias potential grows exponentially with the number of dimensions. Here, we introduce TT-Metadynamics, in which the accumulated sum of Gaussian functions in the original metadynamics method is periodically compressed into a low-rank tensor train (TT) representation. The TT enables efficient memory use and prevents the computational cost of evaluating the bias potential from increasing with simulation time. We present a "sketching" algorithm that allows us to construct the TT with linear scaling in the number of CVs. Applied to benchmark systems with up to 14 CVs, the accuracy of TT-Metadynamics matches or exceeds that of standard metadynamics in long simulations, particularly in systems with high barriers. These results establish TT-Metadynamics as a scalable and effective method for computing free energies that are functions of several CVs.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2026-05-27
DOI
https://doi.org/10.1021/acs.jctc.6c00487
Primary Topic
Quantum many-body systems
Type
article
Field-Weighted Citation Impact
0.00

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article

Adaptive Tensor Train Metadynamics for High-Dimensional Free Energy Exploration

Siyao Yang, Aaron R. Dinner, Nils E. Strand, Yuehaw Khoo
Journal of Chemical Theory and Computation
Quantum many-body systems
article

Adaptive Tensor Train Metadynamics for High-Dimensional Free Energy Exploration

Siyao Yang, Aaron R. Dinner, Nils E. Strand, Yuehaw Khoo
article en

Abstract

A key challenge for molecular dynamics simulations is efficient exploration of free energy landscapes over relevant collective variables (CV). Common methods for enhancing sampling become prohibitively inefficient beyond only a few CVs; in the case of the widely used metadynamics method, the computational cost of evaluating and storing the bias potential grows exponentially with the number of dimensions. Here, we introduce TT-Metadynamics, in which the accumulated sum of Gaussian functions in the original metadynamics method is periodically compressed into a low-rank tensor train (TT) representation. The TT enables efficient memory use and prevents the computational cost of evaluating the bias potential from increasing with simulation time. We present a "sketching" algorithm that allows us to construct the TT with linear scaling in the number of CVs. Applied to benchmark systems with up to 14 CVs, the accuracy of TT-Metadynamics matches or exceeds that of standard metadynamics in long simulations, particularly in systems with high barriers. These results establish TT-Metadynamics as a scalable and effective method for computing free energies that are functions of several CVs.

Journal of Chemical Theory and Computation
University of Chicago (US), Computational Physics (United States) (US)
National Science Foundation, Alfred P. Sloan Foundation, Simons Foundation, Office of Science, National Institute of General Medical Sciences
Affordable and clean energy
Openalex Percentile: Top 6%
Quantum many-body systems
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