fluxfixer: An R package for producing thermal dissipation sap flow data with high quality control

The thermal dissipation method is crucial for estimating tree transpiration, a major component of terrestrial water cycling. However, this method requires careful quality control (QC), and no post-processing software exists for automatic QC that can apply to raw time series with various artifacts. Hence, we developed a novel R package to conduct sophisticated QC combined with statistical methods and machine learning. We further provided selective methods for calibrating the zero-flow conditions. We demonstrate the package’s effectiveness by post-processing raw data observed in a Bornean tropical rainforest. This package will help establish a standardized protocol for processing low-quality sap flow data.

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Publication Details

Journal
SoftwareX
Published
2026-05-23
DOI
https://doi.org/10.1016/j.softx.2026.102740
Primary Topic
Lattice Boltzmann Simulation Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

fluxfixer: An R package for producing thermal dissipation sap flow data with high quality control

Yoshiaki Hata, Tomo’omi Kumagai
SoftwareX
Lattice Boltzmann Simulation Studies
article

fluxfixer: An R package for producing thermal dissipation sap flow data with high quality control

Yoshiaki Hata, Tomo’omi Kumagai
article en

Abstract

The thermal dissipation method is crucial for estimating tree transpiration, a major component of terrestrial water cycling. However, this method requires careful quality control (QC), and no post-processing software exists for automatic QC that can apply to raw time series with various artifacts. Hence, we developed a novel R package to conduct sophisticated QC combined with statistical methods and machine learning. We further provided selective methods for calibrating the zero-flow conditions. We demonstrate the package’s effectiveness by post-processing raw data observed in a Bornean tropical rainforest. This package will help establish a standardized protocol for processing low-quality sap flow data.

SoftwareXVol. 34
University of Hawaiʻi at Mānoa (US), University of Hawaii System (US), The University of Tokyo (JP)
Ministry of Education, Culture, Sports, Science and Technology
Openalex Percentile: Top 5%
Lattice Boltzmann Simulation Studies
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fluxfixer: An R package for producing thermal dissipation sap flow data with high quality control — Yoshiaki Hata, Tomo’omi Kumagai · SoftwareX (2026) | TGRS Research Map | TGRS