Supramolecular Interactions and Hirshfeld Surface Analysis of Three 3-Carboxamidecoumarin Derivatives

In this work, three 3-carboxamidecoumarin derivatives (3b, 3c, and 4) were synthesized and characterized by NMR, IR, and single-crystal X-ray. All compounds maintain an essentially planar coumarin scaffold stabilized by an intramolecular N–H⋯O hydrogen bond (S(6) motif), though compound 4 exhibits a more complex bifurcated S32(11)[S(6)S(6)S(5)] network that enhances its conformational rigidity. The crystal packing analysis reveals that while all derivatives form one-dimensional (1D) supramolecular tapes through C–H⋯O interactions, their 3D architectures differ significantly: 3b and 3c rely on a diverse combination of π⋯π stacking and lone pair⋯π contacts, whereas 4 is governed by highly directional stacking between the pyran and pyridine rings. Hirshfeld surface analysis and CE-B3LYP energy framework calculations quantified the balance between intermolecular forces, showing that 3b is dispersion-dominated (H⋯H, 43.5%), while 3c achieves a balanced electrostatic–dispersion regime due to the nitro group, which increases O⋯H/H⋯O contacts to 37.1% and yields the highest stabilization energy (−69.1 kJ/mol). These results demonstrate that the electronic nature of the substituents at the 3- and 6-positions drastically modulates the hierarchy of non-covalent interactions, providing key insights for the crystal engineering of coumarin-based supramolecular systems.

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Journal
Crystals
Published
2026-05-22
DOI
https://doi.org/10.3390/cryst16060355
Primary Topic
Crystallography and molecular interactions
Type
article
Field-Weighted Citation Impact
0.00

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article

Supramolecular Interactions and Hirshfeld Surface Analysis of Three 3-Carboxamidecoumarin Derivatives

Juan Saulo González-González, Jesús Rodríguez‐Romero, Kayim Pineda‐Urbina, Itzia I. Padilla-Martínez et al.
Crystals
Crystallography and molecular interactions
article

Supramolecular Interactions and Hirshfeld Surface Analysis of Three 3-Carboxamidecoumarin Derivatives

Juan Saulo González-González, Jesús Rodríguez‐Romero, Kayim Pineda‐Urbina, Itzia I. Padilla-Martínez, José L. Madrigal-Angulo, Francisco J. Martínez-Martínez, María de J. Flores-Pérez, Efrén V. García-Baez
article en

Abstract

In this work, three 3-carboxamidecoumarin derivatives (3b, 3c, and 4) were synthesized and characterized by NMR, IR, and single-crystal X-ray. All compounds maintain an essentially planar coumarin scaffold stabilized by an intramolecular N–H⋯O hydrogen bond (S(6) motif), though compound 4 exhibits a more complex bifurcated S32(11)[S(6)S(6)S(5)] network that enhances its conformational rigidity. The crystal packing analysis reveals that while all derivatives form one-dimensional (1D) supramolecular tapes through C–H⋯O interactions, their 3D architectures differ significantly: 3b and 3c rely on a diverse combination of π⋯π stacking and lone pair⋯π contacts, whereas 4 is governed by highly directional stacking between the pyran and pyridine rings. Hirshfeld surface analysis and CE-B3LYP energy framework calculations quantified the balance between intermolecular forces, showing that 3b is dispersion-dominated (H⋯H, 43.5%), while 3c achieves a balanced electrostatic–dispersion regime due to the nitro group, which increases O⋯H/H⋯O contacts to 37.1% and yields the highest stabilization energy (−69.1 kJ/mol). These results demonstrate that the electronic nature of the substituents at the 3- and 6-positions drastically modulates the hierarchy of non-covalent interactions, providing key insights for the crystal engineering of coumarin-based supramolecular systems.

CrystalsVol. 16(6)
Instituto Politécnico Nacional (MX), Universidad Nacional Autónoma de México (MX), Universidad de Colima (MX)
Universidad de Colima, Instituto Politécnico Nacional, Consejo Nacional de Ciencia y Tecnología
Affordable and clean energy
Openalex Percentile: Top 6%
Crystallography and molecular interactions
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