Genome assembly of a euryhaline fish (Mystus gulio) from the Bay of Bengal: a valuable resource for functional genomics and conservation

OBJECTIVE: Mystus gulio (long-whisker catfish) is an euryhaline catfish of economic and ecological significance distributed in South and Southeast Asia. Despite its value in climate-resilient capabilities, mariculture, high market demand, nutritional benefits, and recent reports of its export as an indigenous ornamental fish, genomic resources for this species remain limited. This whole genome sequence will provide a critical foundation for studies in climate-resilience, evolutionary biology, population genetics, and sustainable aquaculture of this economically important species. DATA DESCRIPTION: In this study, the DNA was extracted from a healthy Mystus gulio (location: Cox's Bazar, Bangladesh), and WGS was performed using the Illumina NovaSeq X platform (150 × 2). Sequence quality control (QC) and de novo assembly were then performed using SPAdes v4.0.0, producing a draft genome assembly. The assembled genome spans approximately 0.282 Gb with an N50 of 6.9 kb and 39.17% GC content, providing insight into the genetic architecture of this species.

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Journal
BMC Research Notes
Published
2026-05-21
DOI
https://doi.org/10.1186/s13104-026-07843-1
Primary Topic
Genomics and Phylogenetic Studies
Type
article
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article

Genome assembly of a euryhaline fish (Mystus gulio) from the Bay of Bengal: a valuable resource for functional genomics and conservation

Mohammed Nurul Absar Khan, Asma Salauddin, Muhammad Shahadat Hossain, Nure Sharaf Nower Samia et al.
BMC Research Notes
Genomics and Phylogenetic Studies
article

Genome assembly of a euryhaline fish (Mystus gulio) from the Bay of Bengal: a valuable resource for functional genomics and conservation

Mohammed Nurul Absar Khan, Asma Salauddin, Muhammad Shahadat Hossain, Nure Sharaf Nower Samia, Md. Shamim Rahman, Md. Mahiuddin Zahangir, Md. Rakib Hasan Bhuiyan, Md Khairul Islam, Harunur Rashid
article en

Abstract

OBJECTIVE: Mystus gulio (long-whisker catfish) is an euryhaline catfish of economic and ecological significance distributed in South and Southeast Asia. Despite its value in climate-resilient capabilities, mariculture, high market demand, nutritional benefits, and recent reports of its export as an indigenous ornamental fish, genomic resources for this species remain limited. This whole genome sequence will provide a critical foundation for studies in climate-resilience, evolutionary biology, population genetics, and sustainable aquaculture of this economically important species. DATA DESCRIPTION: In this study, the DNA was extracted from a healthy Mystus gulio (location: Cox's Bazar, Bangladesh), and WGS was performed using the Illumina NovaSeq X platform (150 × 2). Sequence quality control (QC) and de novo assembly were then performed using SPAdes v4.0.0, producing a draft genome assembly. The assembled genome spans approximately 0.282 Gb with an N50 of 6.9 kb and 39.17% GC content, providing insight into the genetic architecture of this species.

BMC Research Notes
Utah State University (US), International Centre for Diarrhoeal Disease Research (BD), Bangladesh Agricultural University (BD), Bangladesh Fisheries Research Institute (BD), Biotechnology Research Institute (CA), Chattogram Veterinary and Animal Sciences University (BD)
Life below water
Openalex Percentile: Top 8%
Genomics and Phylogenetic Studies
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