Productionizing the Model Context Protocol: A .NET Architect's Field Guide

The Model Context Protocol (MCP) is moving from prototype to production faster than the architectural patterns required to operate it safely. This paper is a practitioner's field guide for .NET architects who must deliver MCP-based agentic systems on the OAuth 2.1 / .NET / Azure stack. It covers: the architectural patterns that scale; the four authorization patterns and when to choose each; a security treatment of indirect prompt injection through trusted MCP tool output; the operational concerns of observability, FinOps, and governance; and a twenty-item threat catalogue suitable as an artefact for threat-modelling workshops. The paper is 113 pages, organised into nine chapters and four appendices. A separate reference implementation built on .NET 9 / .NET 10, ASP.NET Core, and Azure-native services accompanies the paper and is cited section-by-section. Reference protocol revision: Model Context Protocol Specification 2025-11-25. Target platform: .NET 9 / .NET 10, ASP.NET Core, Azure. Companion reference implementation: https://github.com/alenjoy333/mcp-enterprise-dotnet

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-05-19
DOI
https://doi.org/10.5281/zenodo.20286676
Primary Topic
Mobile Agent-Based Network Management
Type
article
Field-Weighted Citation Impact
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article

Productionizing the Model Context Protocol: A .NET Architect's Field Guide

Alen Joy
Zenodo (CERN European Organization for Nuclear Research)
Mobile Agent-Based Network Management
article

Productionizing the Model Context Protocol: A .NET Architect's Field Guide

Alen Joy
article en

Abstract

The Model Context Protocol (MCP) is moving from prototype to production faster than the architectural patterns required to operate it safely. This paper is a practitioner's field guide for .NET architects who must deliver MCP-based agentic systems on the OAuth 2.1 / .NET / Azure stack. It covers: the architectural patterns that scale; the four authorization patterns and when to choose each; a security treatment of indirect prompt injection through trusted MCP tool output; the operational concerns of observability, FinOps, and governance; and a twenty-item threat catalogue suitable as an artefact for threat-modelling workshops. The paper is 113 pages, organised into nine chapters and four appendices. A separate reference implementation built on .NET 9 / .NET 10, ASP.NET Core, and Azure-native services accompanies the paper and is cited section-by-section. Reference protocol revision: Model Context Protocol Specification 2025-11-25. Target platform: .NET 9 / .NET 10, ASP.NET Core, Azure. Companion reference implementation: https://github.com/alenjoy333/mcp-enterprise-dotnet

Zenodo (CERN European Organization for Nuclear Research)
Openalex Percentile: Top 3%
Mobile Agent-Based Network Management
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