Critical lack of equilibrium in stochastic kinetic proofreading

Abstract In this paper, we study the relation between the property of detailed balance and the ability of discriminating between different ligands for a class of stochastic models of kinetic proofreading. We prove the existence of a critical amount of lack of detailed balance that the kinetic proofreading models must have in order to have strong specificity for a value of the binding energy $\sigma$ . We also prove that the fact that a kinetic proofreading model has a lack of detailed balance that is larger than the critical one does not necessarily yield strong discrimination properties. Indeed, there exist different sets of chemical rates, leading to the same amount of lack of detailed balance, that have strong discrimination property in some cases and not in others.

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Publication Details

Journal
European Journal of Applied Mathematics
Published
2026-05-19
DOI
https://doi.org/10.1017/s0956792526100400
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
0.00

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article

Critical lack of equilibrium in stochastic kinetic proofreading

European Journal of Applied Mathematics
Gene Regulatory Network Analysis
article

Critical lack of equilibrium in stochastic kinetic proofreading

article en

Abstract

Abstract In this paper, we study the relation between the property of detailed balance and the ability of discriminating between different ligands for a class of stochastic models of kinetic proofreading. We prove the existence of a critical amount of lack of detailed balance that the kinetic proofreading models must have in order to have strong specificity for a value of the binding energy $\sigma$ . We also prove that the fact that a kinetic proofreading model has a lack of detailed balance that is larger than the critical one does not necessarily yield strong discrimination properties. Indeed, there exist different sets of chemical rates, leading to the same amount of lack of detailed balance, that have strong discrimination property in some cases and not in others.

European Journal of Applied Mathematics
University of Bonn (DE)
Deutsche Forschungsgemeinschaft, Rheinische Friedrich-Wilhelms-Universität Bonn
Reduced inequalities
Openalex Percentile: Top 7%
Gene Regulatory Network Analysis
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