AI-Readiness Evaluation of RO-Crates by LLM Rubric Grading: A FAIRSCAPE module for evidence-grounded scoring against the Bridge2AI AI-readiness criteria

We describe a FAIRSCAPE module that evaluates the AI-readiness of biomedical datasets packaged as Research Object Crates (RO-Crates). The module scores each crate against the twenty-eight Bridge2AI AI-readiness criteria, organized along seven dimensions, using structured rubrics applied by a large language model (LLM). The criteria are evidence-of-conformance specifications: conformance is determined by what the metadata says, not whether the relevant fields are populated. An earlier FAIRSCAPE evaluator performs fast deterministic presence/absence checks against predetermined fields but cannot judge whether field content substantively addresses each criterion. Each rubric in the new module specifies an intent statement, the evidence to consider, a three-level ordinal scoring rule, and a JSON output schema (score, rationale, evidence citations, improvement gaps). For each criterion, a compact evidence payload is assembled from the candidate crate and supplied to the grader with the rubric. Per-criterion outputs are aggregated into a release-level report across the seven dimensions. The module was applied to a Bridge2AI Functional Genomics (CM4AI) multi-modal pre-release dataset as an initial case study. Corresponding author: Timothy W. Clark ([email protected])

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-05-18
DOI
https://doi.org/10.5281/zenodo.20275765
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
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article

AI-Readiness Evaluation of RO-Crates by LLM Rubric Grading: A FAIRSCAPE module for evidence-grounded scoring against the Bridge2AI AI-readiness criteria

Sadnan Al Manir, Justin Niestroy, Maxwell Adam Levinson, TImothy Clark
Zenodo (CERN European Organization for Nuclear Research)
Biomedical Text Mining and Ontologies
article

AI-Readiness Evaluation of RO-Crates by LLM Rubric Grading: A FAIRSCAPE module for evidence-grounded scoring against the Bridge2AI AI-readiness criteria

Sadnan Al Manir, Justin Niestroy, Maxwell Adam Levinson, TImothy Clark
article en

Abstract

We describe a FAIRSCAPE module that evaluates the AI-readiness of biomedical datasets packaged as Research Object Crates (RO-Crates). The module scores each crate against the twenty-eight Bridge2AI AI-readiness criteria, organized along seven dimensions, using structured rubrics applied by a large language model (LLM). The criteria are evidence-of-conformance specifications: conformance is determined by what the metadata says, not whether the relevant fields are populated. An earlier FAIRSCAPE evaluator performs fast deterministic presence/absence checks against predetermined fields but cannot judge whether field content substantively addresses each criterion. Each rubric in the new module specifies an intent statement, the evidence to consider, a three-level ordinal scoring rule, and a JSON output schema (score, rationale, evidence citations, improvement gaps). For each criterion, a compact evidence payload is assembled from the candidate crate and supplied to the grader with the rubric. Per-criterion outputs are aggregated into a release-level report across the seven dimensions. The module was applied to a Bridge2AI Functional Genomics (CM4AI) multi-modal pre-release dataset as an initial case study. Corresponding author: Timothy W. Clark ([email protected])

Zenodo (CERN European Organization for Nuclear Research)
University of Virginia (US)
Openalex Percentile: Top 8%
Biomedical Text Mining and Ontologies
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AI-Readiness Evaluation of RO-Crates by LLM Rubric Grading: A FAIRSCAPE module for evidence-grounded scoring against the Bridge2AI AI-readiness criteria — Sadnan Al Manir, Justin Niestroy, et al. · Zenodo (CERN European Organization for Nuclear Research) (2026) | TGRS Research Map | TGRS