Condensate Formation by Structured dsRNA Binding Domains Drives RNA Sequestration in Plants

A key antiviral strategy in plants involves the sequestration of viral genomic RNA by dsRNA-binding proteins DRB2, DRB3, and DRB5 within phase-separated viral replication complexes (VRCs). While these proteins colocalize in VRC condensates to suppress viral replication, the molecular mechanisms underlying viral RNA sequestration and replication arrest in the antiviral defense pathway remain enigmatic. Here, we show that the oligomerization-prone dsRBD2 domain of DRB2/3/5 adopts a modified dsRBD fold and undergoes phase separation upon interaction with dsRNA. We find that the structural modifications lead to a unique surface charge distribution that promotes multivalent, surface-exposed interaction patches on dsRBD. These features enable concentration-dependent transient self-association in DRB2/3/5 and guide the formation of gel-like condensates in the presence of individual triggers such as dsRNA, molecular crowding, or ATP. Our study identifies a plausible mechanism of dsRNA-binding protein induced phase separation and suggests that RNA sequestration via condensate formation contributes to plant antiviral immunity.

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Publication Details

Journal
Journal of the American Chemical Society
Published
2026-05-12
DOI
https://doi.org/10.1021/jacs.6c05034
Primary Topic
Plant Virus Research Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Condensate Formation by Structured dsRNA Binding Domains Drives RNA Sequestration in Plants

Upasana Rai, J. W. M. Paul, Mandar V. Deshmukh, Supriti Das et al.
Journal of the American Chemical Society
Plant Virus Research Studies
article

Condensate Formation by Structured dsRNA Binding Domains Drives RNA Sequestration in Plants

Upasana Rai, J. W. M. Paul, Mandar V. Deshmukh, Supriti Das, Debadutta Patra, Priti Chanda Behera
article en

Abstract

A key antiviral strategy in plants involves the sequestration of viral genomic RNA by dsRNA-binding proteins DRB2, DRB3, and DRB5 within phase-separated viral replication complexes (VRCs). While these proteins colocalize in VRC condensates to suppress viral replication, the molecular mechanisms underlying viral RNA sequestration and replication arrest in the antiviral defense pathway remain enigmatic. Here, we show that the oligomerization-prone dsRBD2 domain of DRB2/3/5 adopts a modified dsRBD fold and undergoes phase separation upon interaction with dsRNA. We find that the structural modifications lead to a unique surface charge distribution that promotes multivalent, surface-exposed interaction patches on dsRBD. These features enable concentration-dependent transient self-association in DRB2/3/5 and guide the formation of gel-like condensates in the presence of individual triggers such as dsRNA, molecular crowding, or ATP. Our study identifies a plausible mechanism of dsRNA-binding protein induced phase separation and suggests that RNA sequestration via condensate formation contributes to plant antiviral immunity.

Journal of the American Chemical Society
Centre for Cellular and Molecular Biology (IN), Academy of Scientific and Innovative Research (IN)
Department of Science and Technology, Ministry of Science and Technology, India, Council of Scientific and Industrial Research, India, University Grants Commission, Science and Engineering Research Board
Openalex Percentile: Top 6%
Plant Virus Research Studies
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Condensate Formation by Structured dsRNA Binding Domains Drives RNA Sequestration in Plants — Upasana Rai, J. W. M. Paul, et al. · Journal of the American Chemical Society (2026) | TGRS Research Map | TGRS