Novel Molecules Generation Using Graph Generative Adversarial Networks
De novo molecular generation remains a central challenge in drug discovery due to the vastness of chemical space and the difficulty of generating molecules that are simultaneously valid, diverse, and property-aware. While graph-based generative models have improved structural validity over sequence-based approaches, many existing methods suffer from mode collapse, limited controllability, and unstable reinforcement learning dynamics. In this work, we propose NovMolG-GAN, a graph-based generative adversarial framework that integrates graph attention mechanisms, a learnable reward network, mode-seeking regularization, and proximal policy optimization-based reinforcement learning to address these limitations. The proposed model enables stable training while explicitly encouraging molecular validity, novelty, diversity, and drug-likeness. Experiments on the ChEMBL-35 dataset demonstrate that NovMolG-GAN achieves high validity (99.6%), high novelty (99.4%) strong uniqueness (88.5%), and competitive quantitative drug-likeness scores under unconstrained generation. Furthermore, a conditional generation ablation incorporating synthetic accessibility as an additional reward illustrates the controllability of the framework and its ability to steer generation toward synthesis-feasible regions of chemical space. These results highlight the potential of NovMolG-GAN as a flexible and extensible foundation for goal-directed molecular design.
Authors
- Chandra Mohan Dasari (ORCID: https://orcid.org/0000-0002-0515-4979)
- Santhosh Amilpur (ORCID: https://orcid.org/0000-0003-1278-2161)
- Amodini A. P.
Institutions
- Rayalaseema University (IN)
- Kurnool Medical College (IN)
- Indian Institute of Technology Indore (IN)
Publication Details
- Journal
- Molecular Informatics
- Published
- 2026-05-01
- DOI
- https://doi.org/10.1002/minf.70031
- Primary Topic
- Machine Learning in Materials Science
- Type
- article
- Field-Weighted Citation Impact
- 0.00