GHOSTS: Validated generation of synthetic hospital time series

Machine learning (ML) holds great promise to support, improve, and automatize clinical decision-making in hospitals. Model training on abundantly available routine data, however, is hindered by data protection regulations. Generative models can comply with privacy laws by learning to synthesize hospital data from a target population while ensuring data privacy. Clinical time series acquired during intensive care are, however, difficult to model using established techniques, especially due to uneven sampling intervals. Here, we introduce GHOSTS (Generator of Hospital Time Series), a novel method that is capable of generating realistic heterogeneous patient trajectories in hospitals including time series with uneven sampling intervals and static patient attributes. To achieve this, GHOSTS introduces novel regularizers and a postprocessing module leveraging low-dimensional summary statistics. We further present a suite of novel benchmarks for synthetic hospital time series, GHOSTS-Bench. We train GHOSTS on a large cohort of patient data from the MIMIC-IV and eICU critical care datasets. Along with measuring the quality of the generated data in terms of how faithfully the distributions of the real data as well as their spatio-temporal dynamics are preserved, we also measure how well ML models trained on the generated data can solve a clinical prediction task on the real data. We observe that GHOSTS outperforms two state-of-the-art approaches, DoppelGANger and HALO, with respect to these criteria. We make the GHOSTS model, a corpus of synthetic data as well as Python codes implementing GHOSTS and GHOSTS-Bench publicly available. These resources will become instrumental in the future development of powerful predictive models for intensive and perioperative care. • This study presents novel generative adversarial network with structured sparsity constrains. • It is used for generation of uneven and heterogeneous time series and static attributes. • Synthetic ICU data were used to train classifier to distinguish between low and high SOFA scores. • Experiments on MIMIC-IV and eICU datasets validated our method’s results.