Large Language Models in Rheumatology-Centered Research: a Scoping Review of Model Openness and Reporting Practices

• Most rheumatology studies using LLMs relied exclusively on closed/proprietary models • Reproducibility-relevant details were frequently underreported • We propose a review-derived checklist to improve reporting transparency • Our findings may inform future consensus-based reporting efforts To systematically identify and characterize original rheumatology research using large language models (LLMs), quantify reliance on closed/proprietary versus open systems, and assess reporting practices relevant to reproducibility (model versions, prompts, inference settings, and availability of code/data), in order to identify recurring reporting gaps and inform pragmatic considerations for improving transparency. We searched PubMed/MEDLINE for English-language peer-reviewed original research published from 1 November 2022 to 23 January 2026. Two reviewers independently screened title/abstract and full texts, with a third resolving disagreements. Data were extracted using an LLM-assisted workflow and then independently verified against source articles by the authors. Extracted items included study characteristics, model families and openness, access mode, versioning/timing, and transparency indicators (prompts, code, data). Of 185 screened records, 63 studies were included. Most were research (n = 26/63; 41.27%) or education-focused (n = 20/63; 31.75%). Studies predominantly used closed/proprietary LLMs (n = 50/63; 79.37%), with limited exclusive use of open-weight models (n = 4/63; 6.35%) and some hybrid use (n = 9/63; 14.29%). OpenAI models were most common (n = 55/63; 87.30%). Reporting was heterogeneous: interaction language was often not reported (n = 42/63; 66.67%); access mode was reported in (n = 19/63; 30.16%); output generation date in (n = 33/63; 52.38%). Prompts were shared in (n = 48/63; 76.19%), but code was publicly available in (n = 4/63; 6.35%), and data in (n = 13/63; 20.63%). LLM-based rheumatology research largely depends on closed models with inconsistent reporting of reproducibility-critical details and minimal code sharing. Clearer reporting practices and, in the longer term, consensus-based standards will be needed to strengthen the methodological robustness of this field.

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Publication Details

Journal
Seminars in Arthritis and Rheumatism
Published
2026-05-01
DOI
https://doi.org/10.1016/j.semarthrit.2026.152994
Primary Topic
Rheumatoid Arthritis Research and Therapies
Type
article
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article

Large Language Models in Rheumatology-Centered Research: a Scoping Review of Model Openness and Reporting Practices

Diego Benavent, Alfredo Madrid-García, Beatriz Merino-Barbancho, Dalifer Freites-Núñez
Seminars in Arthritis and Rheumatism
Rheumatoid Arthritis Research and Therapies
article

Large Language Models in Rheumatology-Centered Research: a Scoping Review of Model Openness and Reporting Practices

Diego Benavent, Alfredo Madrid-García, Beatriz Merino-Barbancho, Dalifer Freites-Núñez
article en

Abstract

• Most rheumatology studies using LLMs relied exclusively on closed/proprietary models • Reproducibility-relevant details were frequently underreported • We propose a review-derived checklist to improve reporting transparency • Our findings may inform future consensus-based reporting efforts To systematically identify and characterize original rheumatology research using large language models (LLMs), quantify reliance on closed/proprietary versus open systems, and assess reporting practices relevant to reproducibility (model versions, prompts, inference settings, and availability of code/data), in order to identify recurring reporting gaps and inform pragmatic considerations for improving transparency. We searched PubMed/MEDLINE for English-language peer-reviewed original research published from 1 November 2022 to 23 January 2026. Two reviewers independently screened title/abstract and full texts, with a third resolving disagreements. Data were extracted using an LLM-assisted workflow and then independently verified against source articles by the authors. Extracted items included study characteristics, model families and openness, access mode, versioning/timing, and transparency indicators (prompts, code, data). Of 185 screened records, 63 studies were included. Most were research (n = 26/63; 41.27%) or education-focused (n = 20/63; 31.75%). Studies predominantly used closed/proprietary LLMs (n = 50/63; 79.37%), with limited exclusive use of open-weight models (n = 4/63; 6.35%) and some hybrid use (n = 9/63; 14.29%). OpenAI models were most common (n = 55/63; 87.30%). Reporting was heterogeneous: interaction language was often not reported (n = 42/63; 66.67%); access mode was reported in (n = 19/63; 30.16%); output generation date in (n = 33/63; 52.38%). Prompts were shared in (n = 48/63; 76.19%), but code was publicly available in (n = 4/63; 6.35%), and data in (n = 13/63; 20.63%). LLM-based rheumatology research largely depends on closed models with inconsistent reporting of reproducibility-critical details and minimal code sharing. Clearer reporting practices and, in the longer term, consensus-based standards will be needed to strengthen the methodological robustness of this field.

Seminars in Arthritis and Rheumatism
Bellvitge University Hospital (ES), Instituto de Investigación Sanitaria del Hospital Clínico San Carlos (ES), Universidad Politécnica de Madrid (ES)
Quality Education
Openalex Percentile: Top 6%
Rheumatoid Arthritis Research and Therapies
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