Quantum crystallography and topological analysis of imine compounds via HAR, QTAIM, and 3D IRI mapping

Abstract A series of three ligands L 1 -L 3 {where L 1 = N, N’-bis(3-methoxysalicylidene (propylen-2-ol)-1,3-diamine; L 2 = N, N’-bis(3-ethoxy-salicylidene) (propylen-2-ol)-1,3-diamine); L 3 = N, N’-bis(5-methylsalicylidene)(propylen-2-ol)-1,3-diamine are reported. Ligands were structurally characterized by NMR spectroscopy. The crystal structures of L 2 ·2EtOH and L 3 were determined by X-ray diffraction using aspheric Hirshfeld Atom Refinement model. Within the framework of quantum crystallography, HAR-derived geometries provide highly accurate hydrogen atom positions that serve as a reliable experimental basis for electron-density analysis. Both Schiff bases possess tautomeric character in their molecular structure, displaying ketoenamine/zwitterionic or enolimine forms stabilized by intra- or intermolecular hydrogen bonding. The nature and strength of these interactions were analyzed using electron-density based topological methods (QTAIM, Laplacian analysis) supported by complementary visualization tools (electron localization function ELF, reduced density gradient, RDG, deformation density maps and interaction region indicator, IRI), allowing detailed insight into proton localization and hydrogen-bond stabilization in the crystal state.

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Publication Details

Journal
Structural Chemistry
Published
2026-05-08
DOI
https://doi.org/10.1007/s11224-026-02804-7
Primary Topic
Crystallography and molecular interactions
Type
article
Field-Weighted Citation Impact
0.00

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Quantum crystallography and topological analysis of imine compounds via HAR, QTAIM, and 3D IRI mapping

Franz Renz, Jana Nováčiková, Cyril Rajnák, Ráchel Rusová et al.
Structural Chemistry
Crystallography and molecular interactions
article

Quantum crystallography and topological analysis of imine compounds via HAR, QTAIM, and 3D IRI mapping

Franz Renz, Jana Nováčiková, Cyril Rajnák, Ráchel Rusová, Ján Moncoľ, Romana Bajcura
article en

Abstract

Abstract A series of three ligands L 1 -L 3 {where L 1 = N, N’-bis(3-methoxysalicylidene (propylen-2-ol)-1,3-diamine; L 2 = N, N’-bis(3-ethoxy-salicylidene) (propylen-2-ol)-1,3-diamine); L 3 = N, N’-bis(5-methylsalicylidene)(propylen-2-ol)-1,3-diamine are reported. Ligands were structurally characterized by NMR spectroscopy. The crystal structures of L 2 ·2EtOH and L 3 were determined by X-ray diffraction using aspheric Hirshfeld Atom Refinement model. Within the framework of quantum crystallography, HAR-derived geometries provide highly accurate hydrogen atom positions that serve as a reliable experimental basis for electron-density analysis. Both Schiff bases possess tautomeric character in their molecular structure, displaying ketoenamine/zwitterionic or enolimine forms stabilized by intra- or intermolecular hydrogen bonding. The nature and strength of these interactions were analyzed using electron-density based topological methods (QTAIM, Laplacian analysis) supported by complementary visualization tools (electron localization function ELF, reduced density gradient, RDG, deformation density maps and interaction region indicator, IRI), allowing detailed insight into proton localization and hydrogen-bond stabilization in the crystal state.

Structural Chemistry
Slovak University of Technology in Bratislava (SK), Leibniz University Hannover (DE), Institute of Inorganic Chemistry of the Slovak Academy of Sciences (SK), University of Ss. Cyril and Methodius in Trnava (SK), Comenius University Bratislava (SK)
Univerzita Komenského v Bratislave, Deutscher Akademischer Austauschdienst, Vedecká Grantová Agentúra MŠVVaŠ SR a SAV
Openalex Percentile: Top 6%
Crystallography and molecular interactions
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