Data Management and Analysis of Metal–Organic Framework Synthesis Using Data Models

The successful synthesis of metal-organic frameworks (MOFs) in high yield and purity critically depends on the details of the procedure. Therefore, the machine-readable as well as findable, accessible, interoperable, and reusable (FAIR) documentation of the synthesis procedure and the associated characterization data is crucial to ensure reproducibility and to enable data-driven analysis and systematic optimization of synthesis. Here, we demonstrate a data-processing workflow developed based on a JSON Schema data model for the synthesis and characterization of MOFs. Its feasibility and usefulness are demonstrated by synthesis data of two MOF systems, Fe-terephthalate MOF and MOCOF-1, and their subsequent characterization by powder X-ray diffraction (PXRD). The data model supports the development of an integrated workflow to (1) parse synthesis data from a table or an electronic lab notebook (ELN) into standardized JSON forms, (2) validate the data sets for errors and incompleteness, (3) serialize the data into the standardized data exchange formats MPIF and XDL, and (4) analyze PXRD data by a decision tree to identify critical synthesis parameters that control phase selectivity and yield. The data model and the workflow are modular and extensible and can be adapted to other data sources, characterizations, and AI methods for analysis. The proposed data model strategy makes MOF synthesis FAIR and AI-ready, fosters the digitalization of synthetic chemistry, and accelerates discovery.

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Publication Details

Journal
Journal of Chemical Information and Modeling
Published
2026-05-08
DOI
https://doi.org/10.1021/acs.jcim.6c00542
Primary Topic
Metal-Organic Frameworks: Synthesis and Applications
Type
article
Field-Weighted Citation Impact
0.00

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article

Data Management and Analysis of Metal–Organic Framework Synthesis Using Data Models

Benjamin Uekérmann, Jürgen Pleiss, Esengül Çiftçi, Simon Krause et al.
Journal of Chemical Information and Modeling
Metal-Organic Frameworks: Synthesis and Applications
article

Data Management and Analysis of Metal–Organic Framework Synthesis Using Data Models

Benjamin Uekérmann, Jürgen Pleiss, Esengül Çiftçi, Simon Krause, Felix Neubauer, Frederic Bender, Kenichi Endo, Niels Hansen
article en

Abstract

The successful synthesis of metal-organic frameworks (MOFs) in high yield and purity critically depends on the details of the procedure. Therefore, the machine-readable as well as findable, accessible, interoperable, and reusable (FAIR) documentation of the synthesis procedure and the associated characterization data is crucial to ensure reproducibility and to enable data-driven analysis and systematic optimization of synthesis. Here, we demonstrate a data-processing workflow developed based on a JSON Schema data model for the synthesis and characterization of MOFs. Its feasibility and usefulness are demonstrated by synthesis data of two MOF systems, Fe-terephthalate MOF and MOCOF-1, and their subsequent characterization by powder X-ray diffraction (PXRD). The data model supports the development of an integrated workflow to (1) parse synthesis data from a table or an electronic lab notebook (ELN) into standardized JSON forms, (2) validate the data sets for errors and incompleteness, (3) serialize the data into the standardized data exchange formats MPIF and XDL, and (4) analyze PXRD data by a decision tree to identify critical synthesis parameters that control phase selectivity and yield. The data model and the workflow are modular and extensible and can be adapted to other data sources, characterizations, and AI methods for analysis. The proposed data model strategy makes MOF synthesis FAIR and AI-ready, fosters the digitalization of synthetic chemistry, and accelerates discovery.

Journal of Chemical Information and Modeling
University of Stuttgart (DE), Universität Ulm (DE), Max Planck Institute for Solid State Research (DE)
Alexander von Humboldt-Stiftung, Carl-Zeiss-Stiftung, Fonds der Chemischen Industrie, Deutsche Forschungsgemeinschaft
Zero hunger
Openalex Percentile: Top 12%
Metal-Organic Frameworks: Synthesis and Applications
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