BROTHERS<sup>TM</sup> Technology: A Non-Equilibrium Approach to the Efficacy-Safety Dilemma in Antisense Oligonucleotides

Clinical development of antisense oligonucleotides (ASOs) is frequently constrained by the efficacy-safety dilemma, in which increased target affinity is accompanied by enhanced off-target toxicity. We propose that this apparent trade-off arises from an equilibrium specificity limit inherent to conventional thermodynamically controlled ASO-RNA recognition. To address this limitation, we developed BROTHERSTM technology, a non-equilibrium-inspired molecular design framework that mitigates the efficacy-toxicity coupling by integrating two orthogonal principles. 1) Static shielding suppresses non-specific interactions of single-stranded ASOs, while 2) dynamic selection enables kinetically driven target RNA recognition via a toehold-mediated strand displacement (TMSD) reaction. In vivo studies demonstrate that BROTHERSTM-based ASOs (BROs) achieve potent and selective gene silencing while markedly reducing toxicities observed with conventional single-stranded ASOs. These results indicate that non-equilibrium control of molecular recognition can effectively alleviate the efficacy-safety dilemma, establishing BROTHERSTM technology as a robust platform for next-generation antisense therapeutics.

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Publication Details

Journal
Journal of Synthetic Organic Chemistry Japan
Published
2026-05-01
DOI
https://doi.org/10.5059/yukigoseikyokaishi.84.434
Primary Topic
DNA and Nucleic Acid Chemistry
Type
article
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article

BROTHERSTM Technology: A Non-Equilibrium Approach to the Efficacy-Safety Dilemma in Antisense Oligonucleotides

Tsuyoshi Yamamoto
Journal of Synthetic Organic Chemistry Japan
DNA and Nucleic Acid Chemistry
article

BROTHERSTM Technology: A Non-Equilibrium Approach to the Efficacy-Safety Dilemma in Antisense Oligonucleotides

Tsuyoshi Yamamoto
article en

Abstract

Clinical development of antisense oligonucleotides (ASOs) is frequently constrained by the efficacy-safety dilemma, in which increased target affinity is accompanied by enhanced off-target toxicity. We propose that this apparent trade-off arises from an equilibrium specificity limit inherent to conventional thermodynamically controlled ASO-RNA recognition. To address this limitation, we developed BROTHERSTM technology, a non-equilibrium-inspired molecular design framework that mitigates the efficacy-toxicity coupling by integrating two orthogonal principles. 1) Static shielding suppresses non-specific interactions of single-stranded ASOs, while 2) dynamic selection enables kinetically driven target RNA recognition via a toehold-mediated strand displacement (TMSD) reaction. In vivo studies demonstrate that BROTHERSTM-based ASOs (BROs) achieve potent and selective gene silencing while markedly reducing toxicities observed with conventional single-stranded ASOs. These results indicate that non-equilibrium control of molecular recognition can effectively alleviate the efficacy-safety dilemma, establishing BROTHERSTM technology as a robust platform for next-generation antisense therapeutics.

Journal of Synthetic Organic Chemistry JapanVol. 84(5)
Provid Pharmaceuticals (United States) (US)
Openalex Percentile: Top 8%
DNA and Nucleic Acid Chemistry
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