Automatic Polygon Annotation of Plant Objects for Training Dataset Preparation in Green Biomass Segmentation Tasks

This paper addresses the problem of automated segmentation of plant green biomass in field crop images aimed at improving the accuracy of crop and weed identification. To construct a training dataset for neural network models, an automatic annotation algorithm is proposed, enabling the generation of polygonal object masks without human intervention. The method is based on adaptive analysis of color characteristics of plant fragments with iterative narrowing of the hue range in the HSV color space, combined with an integral quality metric that accounts for the dynamics of contour area and shape. The proposed method achieved an IoU of 93.22% and a DSC of 96.30%, demonstrating a high level of agreement between automatic and manual annotations. The generated masks are used to train segmentation models of the YOLO11-seg family. Models of different scales (n, s, m, l, x) were trained and evaluated using standard metrics, including Intersection over Union (IoU), [email protected], [email protected]–0.95, F1-score, and Precision–Recall (PR) curves. Experimental results demonstrate that models trained on automatically generated annotations achieve stable segmentation performance of plant green biomass. The best results were obtained with the YOLO11m-seg model, achieving an F1-score of 0. 772. The results confirm the effectiveness of the proposed approach and demonstrate acceptable segmentation quality, supported by both quantitative metrics and visual analysis. The developed automatic annotation algorithm can be used to expand training datasets in computer vision tasks for agricultural applications.

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Publication Details

Journal
Journal of Imaging
Published
2026-04-30
DOI
https://doi.org/10.3390/jimaging12050192
Primary Topic
Smart Agriculture and AI
Type
article
Field-Weighted Citation Impact
0.00

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article

Automatic Polygon Annotation of Plant Objects for Training Dataset Preparation in Green Biomass Segmentation Tasks

Yevgeniy Chayka, Danila Donskoy, Valery Gvindjiliya, Evgeniy Ivliev
Journal of Imaging
Smart Agriculture and AI
article

Automatic Polygon Annotation of Plant Objects for Training Dataset Preparation in Green Biomass Segmentation Tasks

Yevgeniy Chayka, Danila Donskoy, Valery Gvindjiliya, Evgeniy Ivliev
article en

Abstract

This paper addresses the problem of automated segmentation of plant green biomass in field crop images aimed at improving the accuracy of crop and weed identification. To construct a training dataset for neural network models, an automatic annotation algorithm is proposed, enabling the generation of polygonal object masks without human intervention. The method is based on adaptive analysis of color characteristics of plant fragments with iterative narrowing of the hue range in the HSV color space, combined with an integral quality metric that accounts for the dynamics of contour area and shape. The proposed method achieved an IoU of 93.22% and a DSC of 96.30%, demonstrating a high level of agreement between automatic and manual annotations. The generated masks are used to train segmentation models of the YOLO11-seg family. Models of different scales (n, s, m, l, x) were trained and evaluated using standard metrics, including Intersection over Union (IoU), [email protected], [email protected]–0.95, F1-score, and Precision–Recall (PR) curves. Experimental results demonstrate that models trained on automatically generated annotations achieve stable segmentation performance of plant green biomass. The best results were obtained with the YOLO11m-seg model, achieving an F1-score of 0. 772. The results confirm the effectiveness of the proposed approach and demonstrate acceptable segmentation quality, supported by both quantitative metrics and visual analysis. The developed automatic annotation algorithm can be used to expand training datasets in computer vision tasks for agricultural applications.

Journal of ImagingVol. 12(5)
Don State Technical University (RU)
Ministry of Science and Higher Education of the Russian Federation
Zero hunger
Openalex Percentile: Top 9%
Smart Agriculture and AI
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