Self-Refining Segment Anything Model for Nuclei Segmentation as Contrastive Learning Approach to Label-Efficient Pathological Imaging

Background/Objectives: Precise nuclei instance segmentation is a prerequisite for reliable digital pathology, yet the scarcity of pixel-level annotations remains a significant bottleneck for deep learning models. Methods: We propose a self-evolving framework for robust nuclei segmentation that uses only sparse point annotations, extending the Segment Anything Model (SAM). To overcome the limitations of static pseudo-labels, our method introduces a self-evolving labeling strategy via Exponential Moving Average (EMA), which adaptively refines learning targets. We also integrate instance-aware contrastive learning using point prompts as spatial anchors and implement a consensus-based filtering mechanism between prompt-guided and prompt-free decoders. Results: Extensive evaluations on CPM17, MoNuSeg, and the challenging CoNSeP datasets demonstrate that our framework achieves state-of-the-art performance across various backbones, including ViT-B and ViT-H. Conclusions: By enabling a seamless transition from general-purpose foundation models to specialized histopathology experts, this self-refining approach delivers a highly efficient, accurate solution for automated diagnostic workflows in clinical settings.

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Publication Details

Journal
Diagnostics
Published
2026-04-30
DOI
https://doi.org/10.3390/diagnostics16091370
Primary Topic
AI in cancer detection
Type
article
Field-Weighted Citation Impact
0.00

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article

Self-Refining Segment Anything Model for Nuclei Segmentation as Contrastive Learning Approach to Label-Efficient Pathological Imaging

Siwoo Nam, Seong-Jin Park
Diagnostics
AI in cancer detection
article

Self-Refining Segment Anything Model for Nuclei Segmentation as Contrastive Learning Approach to Label-Efficient Pathological Imaging

Siwoo Nam, Seong-Jin Park
article en

Abstract

Background/Objectives: Precise nuclei instance segmentation is a prerequisite for reliable digital pathology, yet the scarcity of pixel-level annotations remains a significant bottleneck for deep learning models. Methods: We propose a self-evolving framework for robust nuclei segmentation that uses only sparse point annotations, extending the Segment Anything Model (SAM). To overcome the limitations of static pseudo-labels, our method introduces a self-evolving labeling strategy via Exponential Moving Average (EMA), which adaptively refines learning targets. We also integrate instance-aware contrastive learning using point prompts as spatial anchors and implement a consensus-based filtering mechanism between prompt-guided and prompt-free decoders. Results: Extensive evaluations on CPM17, MoNuSeg, and the challenging CoNSeP datasets demonstrate that our framework achieves state-of-the-art performance across various backbones, including ViT-B and ViT-H. Conclusions: By enabling a seamless transition from general-purpose foundation models to specialized histopathology experts, this self-refining approach delivers a highly efficient, accurate solution for automated diagnostic workflows in clinical settings.

DiagnosticsVol. 16(9)
Pohang University of Science and Technology (KR), Daegu Gyeongbuk Institute of Science and Technology (KR)
Korean National Police Agency
Openalex Percentile: Top 7%
AI in cancer detection
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Self-Refining Segment Anything Model for Nuclei Segmentation as Contrastive Learning Approach to Label-Efficient Pathological Imaging — Siwoo Nam, Seong-Jin Park · Diagnostics (2026) | TGRS Research Map | TGRS