ARTIFICIAL INTELLIGENCE–ASSISTED DRUG DESIGN IN HETEROCYCLIC CHEMISTRY: A FRAGMENT BASED MACHINE LEARNING REVIEW

Heterocyclic compounds form the backbone of a majority of clinically approved smallmolecule drugs due to their structural diversity, favorable physicochemical properties, and wide spectrum of biological activities. Despite their importance, conventional heterocyclic drug discovery remains a time-consuming and resourceintensive process, relying heavily on trial-and-error synthesis and extensive biological screening. In recent years, artificial intelligence (AI), particularly machine learning (ML), has emerged as a transformative approach in drug discovery, enabling rapid prediction of biological activity, toxicity, and pharmacokinetic behavior. This review critically examines the role of AI-assisted and fragment-based machine learning strategies in heterocyclic drug design. Special emphasis is placed on heterocycle-aware fragment representations, structure–activity relationship modeling, attention-based learning, and model interpretability. Current challenges, limitations, and future prospects of AI-driven heterocyclic medicinal chemistry are also discussed, highlighting the potential of these approaches to accelerate rational drug design and reduce attrition rates.

Authors

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-05-01
DOI
https://doi.org/10.5281/zenodo.20023818
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
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article

ARTIFICIAL INTELLIGENCE–ASSISTED DRUG DESIGN IN HETEROCYCLIC CHEMISTRY: A FRAGMENT BASED MACHINE LEARNING REVIEW

Anchal Sharma* Isha Sharma
Zenodo (CERN European Organization for Nuclear Research)
Computational Drug Discovery Methods
article

ARTIFICIAL INTELLIGENCE–ASSISTED DRUG DESIGN IN HETEROCYCLIC CHEMISTRY: A FRAGMENT BASED MACHINE LEARNING REVIEW

Anchal Sharma* Isha Sharma
article en

Abstract

Heterocyclic compounds form the backbone of a majority of clinically approved smallmolecule drugs due to their structural diversity, favorable physicochemical properties, and wide spectrum of biological activities. Despite their importance, conventional heterocyclic drug discovery remains a time-consuming and resourceintensive process, relying heavily on trial-and-error synthesis and extensive biological screening. In recent years, artificial intelligence (AI), particularly machine learning (ML), has emerged as a transformative approach in drug discovery, enabling rapid prediction of biological activity, toxicity, and pharmacokinetic behavior. This review critically examines the role of AI-assisted and fragment-based machine learning strategies in heterocyclic drug design. Special emphasis is placed on heterocycle-aware fragment representations, structure–activity relationship modeling, attention-based learning, and model interpretability. Current challenges, limitations, and future prospects of AI-driven heterocyclic medicinal chemistry are also discussed, highlighting the potential of these approaches to accelerate rational drug design and reduce attrition rates.

Zenodo (CERN European Organization for Nuclear Research)
Openalex Percentile: Top 6%
Computational Drug Discovery Methods
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