Time-resolved aortic 3D shape reconstruction from a limited number of cine 2D MRI slices
BACKGROUND AND OBJECTIVE: To assess the feasibility and accuracy of reconstructing time-resolved, three-dimensional, subject-specific aortic geometries from a limited number of standard cine 2D magnetic resonance imaging (MRI) acquisitions. This is achieved by coupling a statistical shape model with a differentiable volumetric mesh optimization algorithm. METHODS: Cine 2D MRI slices were manually segmented and used to reconstruct subject-specific aortic geometries via a differentiable mesh optimization algorithm, constrained by a statistical shape model. Optimal slice positioning was first evaluated on synthetic data, followed by in-vivo acquisition in 30 subjects (19 volunteers and 11 aortic stenosis patients). Time-resolved aortic geometries were reconstructed, from which geometric descriptors and radial strain were derived. In a subset of 10 subjects, 4D flow MRI data was acquired to provide volumetric reference for peak-systolic shape comparison. RESULTS: for the young, mid-age, and elderly groups, respectively. CONCLUSION: The proposed framework enables reconstruction of time-resolved, subject-specific aortic geometries from a limited number of standard cine 2D MRI acquisitions, providing a practical basis for downstream computational analysis.
Authors
- Gloria Wolkerstorfer
- Stefano Buoso (ORCID: https://orcid.org/0000-0002-1293-3225)
- Jochen von Spiczak (ORCID: https://orcid.org/0000-0002-1978-1535)
- Rabea Schlenker
- Sebastian Kozerke (ORCID: https://orcid.org/0000-0003-3725-8884)
- Robert Manka
Institutions
- ETH Zurich (CH)
- Institute for Biomedical Engineering (CH)
- University Hospital of Zurich (CH)
Publication Details
- Journal
- Computer Methods and Programs in Biomedicine
- Published
- 2026-04-29
- DOI
- https://doi.org/10.1016/j.cmpb.2026.109425
- Primary Topic
- Medical Image Segmentation Techniques
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Microsoft Research
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
- Schweizerische Herzstiftung