Integrative Clinical–Molecular Modeling Identifies <i>LRRN4CL</i> as a Determinant of Structural and Functional Myocardial Improvement

Background: Mechanical ventricular unloading and systemic circulatory support with left ventricular assist devices (LVADs) enable myocardial recovery in a subset of advanced heart failure (HF) patients, but predictors and mechanisms of recovery are not well understood. Integrating clinical and molecular data may improve identification of patients most likely to recover and uncover biologically relevant targets in HF. Methods: We collected and analyzed left ventricular apical myocardial tissue and clinical data from 208 patients undergoing LVAD implantation across five centers. Pre-implant transcriptomic profiles (22,373 mRNA transcripts) were integrated with 59 clinical variables using supervised machine learning with repeated cross-validation to identify and prioritize features associated with myocardial recovery, defined as a binary outcome based on improvement in left ventricular ejection fraction (LVEF ≥40%) and left ventricular end-diastolic diameter (LVEDD ≤5.9 cm). We also modeled functional (LVEF) and structural (LVEDD) improvement as a continuous outcome without any predefined LVEF and LVEDD pathological thresholds. Feature prioritization was followed by validation in human myocardial tissue and mechanistic interrogation in human induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs). Results: overexpression localized to the sarcoplasmic reticulum, induced transcriptional remodeling characterized by suppression of contractile pathways and activation of stress programs, impaired calcium handling, impaired contraction-relaxation kinetics, and diminished mitochondrial respiratory reserve capacity. Conclusions: as a novel marker associated with impaired myocardial recovery following LVAD-mediated ventricular unloading and systemic circulatory support. These findings move beyond predictive modeling, linking integrative computational discovery to cardiomyocyte dysfunction and providing a translational framework for biologically informed risk stratification and therapeutic targeting for myocardial recovery. CLINICAL PERSPECTIVE: -associated pathways as potential therapeutic targets and demonstrate how integrative clinical-transcriptomic approaches can move beyond clinical prediction toward identification of new biologically precise therapeutic targets in HF following a bedside to bench and back approach.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-04-26
DOI
https://doi.org/10.64898/2026.04.21.720029
Primary Topic
Mechanical Circulatory Support Devices
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article
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article

Integrative Clinical–Molecular Modeling Identifies LRRN4CL as a Determinant of Structural and Functional Myocardial Improvement

Thomas C. Hanff, Junedh Amrute, Rachit Badolia, Joseph R. Visker et al.
bioRxiv (Cold Spring Harbor Laboratory)
Mechanical Circulatory Support Devices
article

Integrative Clinical–Molecular Modeling Identifies LRRN4CL as a Determinant of Structural and Functional Myocardial Improvement

Thomas C. Hanff, Junedh Amrute, Rachit Badolia, Joseph R. Visker, Kory J. Lavine, Hongchao Guo, Mark S. Slaughter, Ben J. Brintz, Scott A. Summers, Rami Alharethi, William L. Holland, Chris Stubben, Manreet Kanwar, Konstantinos Sideris, Iosif Taleb, Jing Ling, Jared Rutter, Sutip Navankasattusas, TingTing Hong, James Jeong, SC Koenig, Ioannis Kyriakoulis, Rana Hamouche, Gregory S. Ducker, Thirupura S. Shankar, Yanni Hillas, Luis Cedeño-Rosario, Yuyu Zhang, Eleni Tseliou, P Shah, C H Selzman, Stavros G Drakos, Tom Greene, Ezra Johnson, Christos P. Kyriakopoulos, Stephen Bailey
article en

Abstract

Background: Mechanical ventricular unloading and systemic circulatory support with left ventricular assist devices (LVADs) enable myocardial recovery in a subset of advanced heart failure (HF) patients, but predictors and mechanisms of recovery are not well understood. Integrating clinical and molecular data may improve identification of patients most likely to recover and uncover biologically relevant targets in HF. Methods: We collected and analyzed left ventricular apical myocardial tissue and clinical data from 208 patients undergoing LVAD implantation across five centers. Pre-implant transcriptomic profiles (22,373 mRNA transcripts) were integrated with 59 clinical variables using supervised machine learning with repeated cross-validation to identify and prioritize features associated with myocardial recovery, defined as a binary outcome based on improvement in left ventricular ejection fraction (LVEF ≥40%) and left ventricular end-diastolic diameter (LVEDD ≤5.9 cm). We also modeled functional (LVEF) and structural (LVEDD) improvement as a continuous outcome without any predefined LVEF and LVEDD pathological thresholds. Feature prioritization was followed by validation in human myocardial tissue and mechanistic interrogation in human induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs). Results: overexpression localized to the sarcoplasmic reticulum, induced transcriptional remodeling characterized by suppression of contractile pathways and activation of stress programs, impaired calcium handling, impaired contraction-relaxation kinetics, and diminished mitochondrial respiratory reserve capacity. Conclusions: as a novel marker associated with impaired myocardial recovery following LVAD-mediated ventricular unloading and systemic circulatory support. These findings move beyond predictive modeling, linking integrative computational discovery to cardiomyocyte dysfunction and providing a translational framework for biologically informed risk stratification and therapeutic targeting for myocardial recovery. CLINICAL PERSPECTIVE: -associated pathways as potential therapeutic targets and demonstrate how integrative clinical-transcriptomic approaches can move beyond clinical prediction toward identification of new biologically precise therapeutic targets in HF following a bedside to bench and back approach.

bioRxiv (Cold Spring Harbor Laboratory)
Allegheny Health Network (US), University of Louisville (US), Washington University in St. Louis (US), University of Utah (US), Huntsman Cancer Institute (US), Intermountain Medical Center (US), University of Chicago (US), Lake City VA Medical Center (US)
Peace, Justice and strong institutions
Openalex Percentile: Top 13%
Mechanical Circulatory Support Devices
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