A functional MeCP2–LBX1 axis regulates neuronal gene expression in neuronal cells

Rett syndrome is a neurodevelopmental disorder caused by mutations in MECP2 and is frequently associated with scoliosis; however, the molecular mechanisms linking MeCP2 dysfunction to this phenotype remain poorly understood. In this study, we identify LBX1, a gene implicated in adolescent idiopathic scoliosis, as a downstream target of MeCP2 and investigate its regulatory role in neuronal gene expression. Chromatin immunoprecipitation (ChIP) analysis demonstrated that MeCP2 binds to the promoter region of LBX1, which contains a CT-rich and highly methylated sequence, providing a favorable context for MeCP2 binding. Consistently, CRISPR/Cas9-mediated disruption of MECP2 in A172 cells resulted in a marked reduction of LBX1 expression, whereas expression of the antisense transcript LBX1-AS remained unchanged, indicating gene-specific regulation. These findings support a role for MeCP2 as a transcriptional activator of LBX1 in this context. Given the established role of LBX1 in specifying GABAergic and glutamatergic neuronal identities, we performed targeted gene expression profiling using a GABA and glutamate-related PCR array. Several neuronal genes were differentially expressed in MeCP2-deficient cells, and GABRB1 and P2RX7 were identified as LBX1-dependent downstream targets, as their expression levels were restored by ectopic expression of LBX1. Together, these findings reveal a previously unrecognized MeCP2-LBX1 regulatory axis and suggest that its disruption may contribute to altered neuronal signaling. This pathway provides a potential molecular link between MeCP2 dysfunction and scoliosis in Rett syndrome.