An End-to-End Foundation Model-Based Framework for Robust LAI Retrieval Under Cloud Cover

Leaf Area Index is a crucial biophysical variable, and its accurate estimation is essential for understanding vegetation dynamics. However, cloud cover significantly restricts optical remote sensing, hindering the generation of spatially continuous Leaf Area Index products. Remote sensing foundation models offer novel solutions to this challenge. This study presents an end-to-end framework based on the fine-tuned Prithvi foundation model for direct LAI retrieval from cloud-contaminated 30 m Harmonized Landsat and Sentinel-2 imagery. By mapping inputs directly to Hi-GLASS reference labels, the proposed architecture processes cloud contamination and vegetation signals simultaneously and circumvents the error propagation inherent in cascaded retrieval pipelines. Results demonstrate that the end-to-end LAI retrieval model significantly outperforms cascaded variants, achieving a superior R2 (0.78) and lower RMSE (0.57). Furthermore, predictive accuracy exhibits a distinct U-shaped trajectory relative to the temporal mean cloud fraction, reaching an inflection point at 50–60% occlusion, which highlights the model’s implicit regularization capacity under severe atmospheric interference. This work establishes that direct feature learning with foundation models offers a more robust and streamlined pathway for generating continuous biophysical products from imperfect optical observations, prioritizing quantitative fidelity over artificial perceptual sharpness.