Schema-Driven Interoperability of Biomedical Data Resources for Improved Knowledge Dissemination and Reuse

Biomedical data is scattered across diverse databases, each with a different scope and design, making integration and analysis challenging. This project creates an open, interoperable framework to connect these databases, enabling efficient access and data use. By applying schema harmonization, aligning database designs, and using open science approaches, it promotes data transparency, reusability, and interoperability. Our approach implements the FAIR (Findable, Accessible, Interoperable, and Reusable) principles, ensuring analysis across databases is accurate and transparent, e.g., when combining gene expression data with gene variant knowledge. The resulting access to the integrated databases simplifies data exploration and maximizes the scientific insights.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2026-04-23
DOI
https://doi.org/10.5281/zenodo.19704231
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
0.00
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article

Schema-Driven Interoperability of Biomedical Data Resources for Improved Knowledge Dissemination and Reuse

Anna Niehues, Magnus Palmblad, Friederike Ehrhart, Hailiang Mei et al.
Zenodo (CERN European Organization for Nuclear Research)
Scientific Computing and Data Management
article

Schema-Driven Interoperability of Biomedical Data Resources for Improved Knowledge Dissemination and Reuse

Anna Niehues, Magnus Palmblad, Friederike Ehrhart, Hailiang Mei, Eleni Mina, Tooba Abbassi‐Daloii, Danyel Jennen, Egon Willighagen
article en

Abstract

Biomedical data is scattered across diverse databases, each with a different scope and design, making integration and analysis challenging. This project creates an open, interoperable framework to connect these databases, enabling efficient access and data use. By applying schema harmonization, aligning database designs, and using open science approaches, it promotes data transparency, reusability, and interoperability. Our approach implements the FAIR (Findable, Accessible, Interoperable, and Reusable) principles, ensuring analysis across databases is accurate and transparent, e.g., when combining gene expression data with gene variant knowledge. The resulting access to the integrated databases simplifies data exploration and maximizes the scientific insights.

Zenodo (CERN European Organization for Nuclear Research)
Leiden University Medical Center (NL), Maastricht University (NL)
Openalex Percentile: Top 7%
Scientific Computing and Data Management
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