Schema-Driven Interoperability of Biomedical Data Resources for Improved Knowledge Dissemination and Reuse
Biomedical data is scattered across diverse databases, each with a different scope and design, making integration and analysis challenging. This project creates an open, interoperable framework to connect these databases, enabling efficient access and data use. By applying schema harmonization, aligning database designs, and using open science approaches, it promotes data transparency, reusability, and interoperability. Our approach implements the FAIR (Findable, Accessible, Interoperable, and Reusable) principles, ensuring analysis across databases is accurate and transparent, e.g., when combining gene expression data with gene variant knowledge. The resulting access to the integrated databases simplifies data exploration and maximizes the scientific insights.
Authors
- Anna Niehues (ORCID: https://orcid.org/0000-0002-9839-5439)
- Magnus Palmblad (ORCID: https://orcid.org/0000-0002-5865-8994)
- Friederike Ehrhart (ORCID: https://orcid.org/0000-0002-7770-620X)
- Hailiang Mei (ORCID: https://orcid.org/0000-0003-1781-5508)
- Eleni Mina (ORCID: https://orcid.org/0000-0002-8972-9206)
- Tooba Abbassi‐Daloii (ORCID: https://orcid.org/0000-0002-4904-3269)
- Danyel Jennen
- Egon Willighagen (ORCID: https://orcid.org/0000-0001-7542-0286)
Institutions
- Leiden University Medical Center (NL)
- Maastricht University (NL)
Publication Details
- Journal
- Zenodo (CERN European Organization for Nuclear Research)
- Published
- 2026-04-23
- DOI
- https://doi.org/10.5281/zenodo.19704231
- Primary Topic
- Scientific Computing and Data Management
- Type
- article
- Field-Weighted Citation Impact
- 0.00