Genome-Wide Identification of LCY Genes in Capsicum annuum Reveals CaLCYB1 as a Key Regulator of Carotenoid Biosynthesis with Implications for Abiotic Stress Tolerance

Carotenoids contribute to photoprotection and abiotic stress adaptation in plants, and lycopene cyclases (LCYs) occupy a key branch point in carotenoid biosynthesis. However, the composition and stress-responsive divergence of LCY genes in pepper remain insufficiently characterized. In this study, we identified six CaLCY genes in Capsicum annuum and analyzed their structural features and expression patterns under drought and salt stress. CaLCYB1 showed the strongest and most consistent induction under both drought and salt stresses and was positively correlated with carotenoid accumulation, whereas the other CaLCY members exhibited distinct or negligible expression patterns. Transient overexpression of CaLCYB1 significantly increased β-carotene and total carotenoid contents by 117.6% and 45.1%, respectively, relative to the empty-vector control, and also augmented ABTS•+ radical scavenging activity as well as ascorbate peroxidase (APX) activity. Conversely, virus-induced gene silencing (VIGS) of CaLCYB1 led to marked reductions in all of these parameters. Correlation analysis, together with gain- and loss-of-function assays, supports an important role of CaLCYB1 in carotenoid accumulation and β,β-branch-related antioxidant responses under stress. Yeast two-hybrid screening identified three potential interactors of CaLCYB1, namely CaUBQ, CaLHP1, and CaLARP6B. This study provides a family-level characterization of LCY genes in pepper and identifies CaLCYB1 as a major stress-responsive member that directs carotenoid flux and enhances antioxidant capacity under abiotic stress.