Mislabel Detection in Multi-Label Chest X-Rays via Prototype-Weighted Neighborhood Consistency in CoAtNet Embedding Space

Large-scale chest X-ray (CXR) datasets often rely on report-derived or weak labels, introducing missing and incorrect annotations that can degrade downstream models and limit trust. We study training-free mislabel detection in multi-label CXRs by scoring neighborhood label consistency in a fixed embedding space. Using the NIH Chest X-ray Kaggle sample (5606 CXRs), we extract intermediate CoAtNet features and obtain 64-dimensional embeddings with a frozen CoAtNet backbone and a lightweight refinement head. On top of these embeddings, we compare kNN consistency baselines with distance weighting and label-set similarity against LPV-DW-CS, clustered prototype voting weighted by distance and cluster support. We evaluate three synthetic label-noise regimes with review budgets matched to the corruption rate: random single-label (5% and 20%), boundary-noise (20% corruption within the lowest-density 20% subset), and disjoint-label replacement (20% within that subset). LPV-DW-CS yields the highest downstream macro-AUROC after filtering top-ranked samples (up to 0.8860), while kNN variants achieve higher Recall@budget at the same review rates (up to 99.44%). An image-only expert Likert review of top-ranked real samples finds substantial label-set inconsistencies (54.1% for LPV-DW-CS-280-A; 60.5% for KNN-DW-LSS), supporting neighborhood-consistency ranking as a practical, training-free tool for targeted dataset auditing.

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Publication Details

Journal
Applied Sciences
Published
2026-04-22
DOI
https://doi.org/10.3390/app16094067
Primary Topic
Machine Learning and Data Classification
Type
article
Field-Weighted Citation Impact
0.00

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article

Mislabel Detection in Multi-Label Chest X-Rays via Prototype-Weighted Neighborhood Consistency in CoAtNet Embedding Space

Ariel Gamboa, Claudio Sotomayor, Mauricio Araya
Applied Sciences
Machine Learning and Data Classification
article

Mislabel Detection in Multi-Label Chest X-Rays via Prototype-Weighted Neighborhood Consistency in CoAtNet Embedding Space

Ariel Gamboa, Claudio Sotomayor, Mauricio Araya
article en

Abstract

Large-scale chest X-ray (CXR) datasets often rely on report-derived or weak labels, introducing missing and incorrect annotations that can degrade downstream models and limit trust. We study training-free mislabel detection in multi-label CXRs by scoring neighborhood label consistency in a fixed embedding space. Using the NIH Chest X-ray Kaggle sample (5606 CXRs), we extract intermediate CoAtNet features and obtain 64-dimensional embeddings with a frozen CoAtNet backbone and a lightweight refinement head. On top of these embeddings, we compare kNN consistency baselines with distance weighting and label-set similarity against LPV-DW-CS, clustered prototype voting weighted by distance and cluster support. We evaluate three synthetic label-noise regimes with review budgets matched to the corruption rate: random single-label (5% and 20%), boundary-noise (20% corruption within the lowest-density 20% subset), and disjoint-label replacement (20% within that subset). LPV-DW-CS yields the highest downstream macro-AUROC after filtering top-ranked samples (up to 0.8860), while kNN variants achieve higher Recall@budget at the same review rates (up to 99.44%). An image-only expert Likert review of top-ranked real samples finds substantial label-set inconsistencies (54.1% for LPV-DW-CS-280-A; 60.5% for KNN-DW-LSS), supporting neighborhood-consistency ranking as a practical, training-free tool for targeted dataset auditing.

Applied SciencesVol. 16(9)
Hospital Clínico de la Universidad de Chile (CL), University of Chile (CL), Federico Santa María Technical University (CL)
Universidad Técnica Federico Santa María, Agencia Nacional de Investigación y Desarrollo, Comisión Nacional de Investigación Científica y Tecnológica
Peace, Justice and strong institutions
Openalex Percentile: Top 13%
Machine Learning and Data Classification
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